barSeed - Barley Seed Development Database

Probe CUST_26940_PI390587928

Source Contig U35_15211

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26940_PI390587928	Hv_44K_v2	GTTTCCTTGATCTGTGCGTACATAACATCAATAAAAACGTCTGCTCTGTTGATCAAAAAA	854	GeneList: bisque4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.040	2.821	2.217	0.861	0.309	0.271
Raw	164.796	708.195	458.091	284.465	34.908	35.023

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_39255.1	827	2e-21	645 - 698	100	54 / 54	plus
Harvest21	ABC03112	949	3e-25	855 - 914	100	60 / 60	plus	ABC03112
Harvest35	U35_15211	962	3e-25	855 - 914	100	60 / 60	plus

Contig Sequence (962 bp)

>U35_15211 962 Hv_44K_v2
AGAGAGAGAGAAGAGCGAGGGATAAAAAAGAGGTTTGTTTGTGGGGTCTCCCGCGCGCGC
TCGGCGATGGCGAACTCGTTCCTCTCGATGAAGACGGGCCCGGCGGCCGGCGCGTCGGAG
GCGTCGCAGGCGCTGCTCGAGTCGGACCTGCGGGAGCTGACCATGGCGGCGCGGAAGCTC
GCCAACCACGCCATCGTCCTCGGCGGCGGCCTCGGCTTCATCGGCACCTTTCTCCAGTGG
CTCGCCTTCGCCGCCGCCGTATATCTCTTGGTGCTGGACAAGACGAACTGGAAGACCAAC
ATGCTGACGGGTCTCTTGGTCCCATACATTTTCTTCACCATGCCTTCTCTGCTCTTCTCC
TTTATAAGGGGGGAGATTGGTAGCTGGATCGCGTTCGTTGTTGTGGTCCTGCGGCTATTC
TTTCCGCGCCACTTCCCTGATTGGCTAGAGCTGCCTGGCTCTCTGATCCTCCTGACGGCG
GTCGCCCCCAGCATCTTCGCGGACACCTTCAGGGGCTCGTGGCTCATCATCGGCGTCGCC
GTATGCCTGGTCATCGGGTGCTACCTGCTCCACGAGCACATCAAGGCGTCAGGAGGCCTC
AAGGAGGCCTTCCAGAAGGCCAATGGATGGTCCAACACCATCGGCATCCTCCTGCTCTTC
ATCTACCCGGTCTGGGCCATCGTGATGTGGTTCCTGTAGGCTTGTGCCTGCAGTTCCTCG
GTCGCTGTTTCAGCGCTCATCGTGCGACGATTGATAAAGTGATTTGGCGTCGATGAACCC
ATGCGAGCTTGTACCTGTTGAATGTTTGATGAACTGTCTCGGCGATGTTTCCATTTGGTG
CCACTGCTTAATTTGTTTCCTTGATCTGTGCGTACATAACATCAATAAAAACGTCTGCTC
TGTTGATCAAAAAAAAAAAAAAAATGATAAGCTGCCGGCAAGTTCTTCTCATGCATGTTC
GT

Homology of Contig U35_15211 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g55850.1	211	8e-74	protein\|cold acclimation protein WCOR413, putative, expressed
Brachypodium v1_2	Bradi1g07440.1	131	2e-58
Arabidopsis v10	AT2G15970.1	197	8e-57	\| Symbols: COR413-PM1, WCOR413, WCOR413-LIKE, ATCOR413-PM1, FL3-5A3, ATCYP19 \| cold regulated 413 plasma membrane 1 \| chr2:6950163-6951012 FORWARD LENGTH=197