barSeed - Barley Seed Development Database

Probe CUST_26938_PI390587928

Source Contig U35_15213

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26938_PI390587928	Hv_44K_v2	CCGGTAGAAGTTGAAGGATTATTGAGTGTACATTTATCTCTTCGGGTGGTCATTTCGGGC	776	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66786.1	903	2e-24	162 - 221	100	60 / 60	minus	ABC03050 ABC40438
JLOC1	JLOC1_44047.1	1616	8e-25	1188 - 1247	100	60 / 60	plus
Harvest35	U35_15213	887	3e-25	777 - 836	100	60 / 60	plus

Contig Sequence (887 bp)

>U35_15213 887 Hv_44K_v2
GCAGACCGAGCCAAGAAACCTACTCTCATCATTTTCTAATCCTCGCGTCGTTGACTGCCG
CGTACGATGGCGGAGGCCGAGGCGGCCGCGGCGGGTCCGGCGGAGGAGGGGAGGGGCAAG
ATGGTGGTGCTGGTCGGCGTGGACGACAGCGACCACAGCTACCGCGCGCTCGAGTGGGCC
GTGCGTTACGTGGCGGAGACGGCCGGCGCCGGGGCCCCGGCGGAGCTCGTCGTCGTCCAC
GCTAAGCCGGCCGTGTCCTCCGTCGTCACCCTCGGCGGCCCCGCCGCCGCCGGGGACGTG
GTGAGGTACGTGGATGCGGACCTGCGCAGGAGGGCCGACGAGGTCGTCGACAGGGCTCGC
CGCCTCTGCGCCGCCAACTCGGTGCAGGGTGTGGTGGAGGTGATCGACGGGGAGCCGAGG
TACGTGCTCTGCAACGCCGTGGAGAAGCACCACGCCGACCTGCTCGTCGTCGGCAGCCAT
GGCTACGGCGCCATCAAGAGGGCATTCCTCGGGAGCGTGAGCGACTACTGCGCCCACCAC
GCGCACTGCTCGGTGATGATAGTCAAGCAGCCCAAGTCCAAGGAATGATCGCCATTTCCA
GCTCCGGTGTTGGCATTGTGCCATTTGCGTGACACACGAACTGCACTGCACTGCACTGTA
TCCCTGCCTAATTACTGCTTTATTTGTTCGATCCTCCTAATGTCTGTACATGATGCTTTA
ATTGGGCTCATCTTCTGGTATCATCACCGTTTGCTGCACTTGTTTGCACCATTAACCCGG
TAGAAGTTGAAGGATTATTGAGTGTACATTTATCTCTTCGGGTGGTCATTTCGGGCCATT
GCACCATTGATAACAAACACCTGGACAGAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_15213 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g47620.1	172	5e-61	protein\|universal stress protein domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g18080.1	176	3e-68
Arabidopsis v10	None