barSeed - Barley Seed Development Database

Probe CUST_26937_PI390587928

Source Contig U35_15214

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26937_PI390587928	Hv_44K_v2	CTTGTTTGAACGCCCCTACTATCAGTTCATGGAATCTTAGAACACCTGTTCTGATTTTTT	1463	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.144	1.219	1.183	1.028	0.465	0.443
Raw	1093.591	1772.255	1569.437	2062.873	345.498	346.111

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62249.1	2462	7e-23	73 - 132	98	59 / 60	minus	ABC03052 ABC40416
JLOC1	JLOC1_40721.1	2939	4e-23	2328 - 2387	98	59 / 60	plus
Harvest35	U35_15214	1554	3e-25	1464 - 1523	100	60 / 60	plus

Contig Sequence (1554 bp)

>U35_15214 1554 Hv_44K_v2
GCATCCAGTGCCGCCTCATCGTTCCAGCGCCCAGTCCTCTGCCTGTTTGACAGGAATTTC
GAGTTGTCGGTGGGGATACAGCACGATTGGAGCTACCGCCCGTTGGTCCATGACGTGCTG
AGCTTCAAGCTCAACAAGCTGAGGTTGCCAACAGAGAAGTATGATCTGGATGACTCTGAC
CCATTTTGGGTGGCAAACAGCTGGTCGCCATTTCCTAAAGTGGCCGAGGAGATAGAAGCG
CAGCTCGCCAAGTACAAGCAGGATGTAGACGAGGTGAACCAGCGCACGGGTGGTGGTAGG
GATGGGGTTGAGTTTGATGGAACAGATCTTATTGGCAACACCAAGCACCTCATGAATGCG
GTGAACTCACTCCCTGAGCTGACCGAACGGAAGAAGATGATCGATAAGCACACGAATATT
GCAACTGCATTGCTTGGGCACATCAAGGAGAGGTCTCTGGATGGATACTATGAGTGCGAG
AATGATATGCTCGTGAATGGTACTGTGGATCGGAACATGCTGCTGAGTCTACTCAGAGGG
AAGGGCACCAAGGAGGATAAGCTCCGGCTGGCTGTCACCTATCTGCTATCCTTTGAGGCG
CCACTGGCATCTGAACTAGAGCAGGTTGAGGCTGCGCTGCGGGAGTCAGAAGTAGACATG
TCTGCATTCCAGTATGTGAAGAGGATAAAGTCGTTGAACACGCAATTTGCTGCCGCGTCA
AGCACAGCAAGCAGGAGCAACATTGTTGATTGGGCAGAGAAGCTTTATGGACAGTCCATT
AGTGCTGTGACAGCAGGCGTGAAGAATCTCTTATCGGATGGTAGGCAGCTGGCCCTGACT
AGGACTGTTGAAGCCCTCATGGAAGGGAAACCAAACCCAGAGGTGGACAACTACCTATTG
TTCGACCCACGGGCCCCTAGATCAGGAACTGGTGGGCAGTTTAGAGGACCCTTCAGAGAA
GCAATTGTTTTCATGATTGGTGGCGGAAATTACATTGAGTATAGGAGCTTAGTTGAGCTA
GGGCAACGCTCACAGCCTTCAAAGCATGTCATATATGGAGCAACAGAGATTCTCAATGGT
GTGGAATTTATTCAGCAACTCGCAGAATTGGGACAGAAAGCGGGATTGGGTGGTGGCAGC
AGCAACCTACCACAACAGTAAAAATATGCTCTTACCAGATGTTTTGATGCTAAGGTGGGA
TTGAAGCTTCACAGGTTGCAGTAAATAGTCTCTTGCCGACACTTGATGCTAAGGAGTGAT
CCAGGCTGCATAGACTAATGTGTAATGGTATCAAATTTCTCTGTTGTCGGATTTATGGCG
CTGCTTTGAATGAGTTATCAATACAAAGATTTCTTGCGAGATTCAACTGCTCTAGAAGTC
CAATATGTTGAAATGTCCATGTATGCTCGTTTATTGTTGTTTCTTTTTTTCTTTTGCCCC
CTTTTGTGAAATGTTAGCAGAATCTTGTTTGAACGCCCCTACTATCAGTTCATGGAATCT
TAGAACACCTGTTCTGATTTTTTTGAAAAAAAAAAAAAAAAGCTCGAGGGGGGC

Homology of Contig U35_15214 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g42320.1	624	0.0	protein\|Sec1 family transport protein, putative, expressed
Brachypodium v1_2	Bradi5g24240.1	620	0.0
Arabidopsis v10	AT2G17980.1	627	1e-172	\| Symbols: ATSLY1 \| Sec1/munc18-like (SM) proteins superfamily \| chr2:7824352-7826404 FORWARD LENGTH=627