barSeed - Barley Seed Development Database

Probe CUST_26934_PI390587928

Source Contig U35_17587

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26934_PI390587928	Hv_44K_v2	CCCTCCTAATTTAAGAACCTTGTAATACAAATCCCAACGCAAGGGTTTTAAACCTAAAAT	1653	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.659	2.436	1.283	0.916	0.639	0.611
Raw	252.283	360.161	167.122	180.619	45.010	47.076

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC08559	1723	3e-25	1654 - 1713	100	60 / 60	plus	ABC08559
Harvest35	U35_17587	1723	3e-25	1654 - 1713	100	60 / 60	plus

Contig Sequence (1723 bp)

>U35_17587 1723 Hv_44K_v2
CAGCTCAGGCGGGCGGGCGGCTACCCGAGTCGCCCGAAAAGCCCACCAGTTTCTTCCCTT
CCGATTTCGCACGATGGCGACTCTCCTCCGCCGATCCGCCGCCCCCGCGCGGCAGCTTCT
CCTCCTTCCCCGCCAGCTCGGCGCCGCCCGCTCCATGTCCCGCTACTACGCCCGTGACGA
GGTTTCACGGTTCGACGCGCTGAGCACGCCGGTGAACTGGGGCGTGAGCATCGTACCGGA
GAAGAAGGCCTTCGTGATTGAGCGCTTCGGCAAGTACCTCAAGACGCTCGACTCCGGGAT
CCACGGGCTCGTCCCCCTCGTCGACCGCATCGCCTACGTGCACTCTCTCAAGGAGGAAGC
CATCCCCATCCCCGACCAGTCTGCTATCACCAAGGATAACGTGGTCATCCAGATCGACGG
CGTCCTTTACGTCAAGATTGTTGATCCCTACCGTGCTTCATATGGCGTGGAGAATCCCAT
TTTTGCAGTCATTCAACTTGCGCAGACAACTATGAGAAGTGAGCTTGGAAAGATAACTTT
GGACAAGACTTTTGAAGAGAGAGACACATTGAATGAGAAGATTGTGAGGTCCATAAATGA
GGCTGCGACAGACTGGGGCTTGAAGTGTCTTCGTTACGAGATCAGGGACATTTCTCCTCC
ATCGGGTGTGAAGAATGCTATGGAGATGCAAGCAGAGGCAGAAAGGAGAAAGCGTGCTCA
AATTCTCCAGTCAGAAGGGGCTATGTTGGATCAGGCAAACCGCGCAAAGGGTGAGGCTGA
AGCGATTCTTTCCAAGTCACAAGCTACCGCCGAAGGGATTAGAATGGTCTCAGAGTCTAT
GAGAGCTGAAGGCAGTGCTGAGGCTGCAAAACTGAGAATTGCTGAACAATACATCACAGC
ATTTGCTGCTCTGGCCAAGAATACCACAACAATGCTTCTTCCAAGTGACGCTGGCAACCC
ATCATCTATGATAGCCCAGTCTCTCCAGATATACAAGCACATAAGCCAGTCCAAAGGAGG
GAACCAACAGGCAGAAGAAGCTGAGGAAGCAGGACCGCAAGAAGAGGCCGATATGTTTGG
CCTACCTTCTGTGACCAGCGTGACCCCACCCAGCACGCAAACAGGCCATGGCAGCACGTT
CTCCCTGCAGAGGCGTAAAGAATGATCAGCCGTGTTCAAGTACCTAAGGGAACCCTTTTT
AGATAGTAGGGTGTCACTGAAAACACCAGCAGCATTTGAGGTTTCGAGCTTAATTCATGT
GATGTTGAGTCGGCTTAGGTTGATATGGTAATTGACCTGACATTGGTTATCCAGGCGCCA
AATGCAAGGAGGCTAGGTGTCTGGAGAGTTTTTGATGGCAGCCTTCAAGACTTGTGCAAA
TGCAAGTATATCCCTCACGATGCCAGCATACGCTTGATGGCAATATTTCACTGCAGTTTT
TTTTTTTTCATGTGTTCCGATGTCAGTTTTACATGTTGACAGTTTGCATGTTGTCCTACT
CTATTTACTTCTCCAATGGGTTTACTCTGGAGTTTTGGAGTTTTGTTCTTTGCAGTAAGT
CTCTGGATTTTTGTTCAGAGTCGGTGTTGGAGTTGTATCGAATATTGTGTACAAGTAGGT
TACAGTTGGACTTGTAGTTGTAGGGTAAAACATCCCTCCTAATTTAAGAACCTTGTAATA
CAAATCCCAACGCAAGGGTTTTAAACCTAAAATATATAAATGC

Homology of Contig U35_17587 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g06200.1	378	4e-170	protein\|stomatin-like protein 2, putative, expressed
Brachypodium v1_2	Bradi3g16450.1	351	9e-178
Arabidopsis v10	AT4G27585.1	411	3e-129	SPFH/Band 7/PHB domain-containing membrane-associated protein family \| chr4:13766984-13769832 REVERSE LENGTH=411