barSeed - Barley Seed Development Database

Probe CUST_26931_PI390587928

Source Contig U35_17589

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26931_PI390587928	Hv_44K_v2	TCTCCGACATGAAAATTTTAACTAAATACCTCAACCAGTCACTGCCTGTCCCTTAAAAAA	1171	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.602	3.459	0.809	0.739	0.900	0.968
Raw	35.448	42.903	7.989	11.305	3.538	5.405

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC07279	1242	3e-25	1172 - 1231	100	60 / 60	plus	ABC07279
Harvest35	U35_17589	1242	3e-25	1172 - 1231	100	60 / 60	plus

Contig Sequence (1242 bp)

>U35_17589 1242 Hv_44K_v2
GGGAGATTTTCCTTATCCTCCTGGATGCCGCTTCTCATGCGTCTCTCCCCACCGGCGGCG
GCGCCGTCGCCGCCGTACCGGCGAAGCCACGGAGGATCTACCAGGAGATTCAACGCCGTA
CTCCCCGACACCTCAGAGCGAATGTTTCCGGTAGCTAGATATGCCTCGTCCTCAACTGAT
CCGGCGCGTCCTAGGAGCGACGACTTCGATATAGCTAATGGACATGGTCATTTCCTTATC
AAGTCTACATCTGATCTTCAGAAAGCTGTATCTTGTTTCGGGAAAGCATTGGTGACCAGC
AGCGCTGTCATGCTTGTGACGCCTCCCAGTTGCTTGGCAGAACAATGTGACCCTGGGTAC
TCTCTTCCTAACATGCCACTGCTGTTTGCGATAGCCATGGTCGGTGCTACAGTTGGAGGG
CTGCTTGCGAGACAAAGGAAAGGGGAACTTAAAAAGCTTAACGATCAGCTACGTCAGATA
AATGCTTCACTGAGAAGACAAGCCAAGATTGAATCCTACGCTCCTGCTTTGAGCTATGCA
CCGGCTGCTAGTAAGATACCAGAATCAGAAGTCATTGTTGATCCTCACAAACAGCGCCTG
ATCACATATCTGAGGACTGGGAAGAACTACCTAAGAAACCAAGCTCCAGACAAGGCATTT
TCCGAGTTTAAGGCAGCTCTTGATCTTGCACAATCTTTGGGTGATCATGTTGAAGAGAAG
AAGGCGGCGCGAGGATTAGGAGCATCATTGCAAAGACAAGGGAATTACAAGGAAGCAATA
AAGTACCACTCCATGGTTCTCAGTATCTCCAAGATGACTGGAGAGGATTCAGGTGTCACT
GAGGCATACGGGGCAATAGCCGATTGCTACACTGAAGTTGGTGAGCTCGAGAAGGCAGGC
AAGTTCTACGATGAGTACATTGCAAGATTGGAGAATGACTGAAACAGTGTGTCTGTGCTA
CCTGTGAGAACGCAAACACGGCTAAACTTTTTGTTCTTCACTAGTGATATGGTGTTCTGT
AGATGTGCAGTTCCTGGCAACAACAAAAAACTCTGGTTTGTTATATTTTTAAGTTGTTTC
CCCTGAATTATGTGAGATCATTTGGGTCAGCAGCATGCTGTGTAATTATTTTGGTAGTGA
TAGCTTAATGTAAGTACAGGCGAAATTGAGCTCTCCGACATGAAAATTTTAACTAAATAC
CTCAACCAGTCACTGCCTGTCCCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_17589 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g32730.1	325	1e-138	protein\|tetratricopeptide repeat containing protein, putative, expressed
Brachypodium v1_2	Bradi4g27210.1	325	1e-152
Arabidopsis v10	AT3G14110.3	317	7e-92	\| Symbols: FLU \| Tetratricopeptide repeat (TPR)-like superfamily protein \| chr3:4676222-4677602 REVERSE LENGTH=317