barSeed - Barley Seed Development Database

Probe CUST_26930_PI390587928

Source Contig U35_43852

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26930_PI390587928	Hv_44K_v2	ATAGCATCTTACAGAACTTTCTCACTCATGTAACCAGGTCTAACCAAAGGGACAATGTTT	314	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.069	1.086	1.127	1.094	0.663	0.386
Raw	63.923	94.999	91.697	139.972	32.451	19.099

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC41044	374	3e-25	315 - 374	100	60 / 60	plus
Harvest35	U35_43852	374	3e-25	315 - 374	100	60 / 60	plus

Contig Sequence (374 bp)

>U35_43852 374 Hv_44K_v2
CAGCCTGACGTCGCCGCCCCCTCCTCGCTGCGACATCGGTCCCCCCCGGCCCCTCCTTTG
CTCACCTGCTTGGCTTCGTCGCTGTTGCTGCTGGTGTTGGTTGCAGAGTTCGGGTCCGCG
CTCGACGAGGAGGGGAAGGGCGCGGCCGCGGTGGCCGCAGGCGTGCGGGACTCCAACAAG
CGCACCGCGCTGCACTTCGCCGCCCGGGAGGGGCACACCGAGGTCTGCCAGTTCCTCGTC
AAGCAGCTCCGCCTCCCCGTCGACCCCAAGGACGACGATGGCTGTTGTCGTTGGTAGAGC
CCTGCGGATATTGCATAGCATCTTACAGAACTTTCTCACTCATGTAACCAGGTCTAACCA
AAGGGACAATGTTT

Homology of Contig U35_43852 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None