- Probe CUST_26919_PI390587928
- Source Contig U35_29567
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_26919_PI390587928 | Hv_44K_v2 | GCATATGTGTATGCACAACAGTACATGTGGCAATTATGAATGATTAAAGGCCACAATTAT | 439 | GeneList: black MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.086 | 0.102 | 0.757 | 2.632 | 1.850 | 3.319 |
| Raw | 2.723 | 7.496 | 62.001 | 296.654 | 85.657 | 163.937 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_6469.1 | 557 | 8e-25 | 496 - 555 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC28905 | 505 | 3e-25 | 440 - 499 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_29567 | 505 | 3e-25 | 440 - 499 | 100 | 60 / 60 | plus |
Contig Sequence (505 bp)
>U35_29567 505 Hv_44K_v2 GTGATATCTTCTTCNTATGGGACTTGCCAAGAGCAGTACAACGCGACCAACAATCATGTA CGCCCTGGCTGTTTCTTTCCTGGTTCTTGCTATAATGTGCTCTACCTTGCCATCGTGCCA TCCCCGCAATGAGGTGAAGTGCAAACCTTTAGATCCATGTGATGACGCTGGATGCAAAAC TATATGTGCGGGTACGGGCCTGCCTTTTGCCAGTCCTTTTTGTAAGGAGACCCATCCTCC ACTGTGTTGCTGCATAGGATAGAAACATAAGTTGATTGTTCCTTTTGCTCGAACTATCCA ATGCTGAATAATTTATTCGTGTTATGCATGCGGGCCAATCTAAATAAAGATGTTCGTTTT CTTCCAACCAATTGTTGTGTGTTTGACACCCTGAGATTGGTGCAAAATTAAAGAGCTTTG TTATAATTGTTAATGGTTTGCATATGTGTATGCACAACAGTACATGTGGCAATTATGAAT GATTAAAGGCCACAATTATACAGCA
Homology of Contig U35_29567 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |