barSeed - Barley Seed Development Database

Probe CUST_26918_PI390587928

Source Contig U35_29568

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26918_PI390587928	Hv_44K_v2	TTCTTCAGCTTCTGAGTGCTGTGCCACCTCTACCCCTTCGCCAAAGGCCTCCTGGGACGC	322	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.064	1.593	1.890	0.941	0.349	0.353
Raw	367.570	845.977	872.932	699.287	88.595	98.749

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17477.1	4409	3e-21	442 - 501	97	58 / 60	minus	None
JLOC1	JLOC1_12066.1	4208	2e-21	3731 - 3790	97	58 / 60	plus
Harvest21	ABC28909	383	3e-25	323 - 382	100	60 / 60	plus
Harvest35	U35_29568	383	3e-25	323 - 382	100	60 / 60	plus

Contig Sequence (383 bp)

>U35_29568 383 Hv_44K_v2
GTCCGGGATCACGCTGCACGAGTGGTGGCGCAACGAGCAGTTCTGGGTGATCGGCGGCAC
GAGCGCGCACCCGGCGGCGGTGCTGCAGGGCCTCCTCAAGGTGATCGCCGGCGTGGACAT
CTCCTTCACGCTCACGTCCAAGCCCGGCGGCGCAGACGACGGCGAGGAGGACACGTTCGC
GGAGCTGTACGAGGTGCGGTGGAGCTTCCTGATGGTGCCACCCGTGACCATTATGATGCT
GAACGCGGTGGCGCTGGCGGTGGGGACGGCGAGGACGCTATACAGCGAGTTCCCGCAATG
GAGCAAGCTGCTGGGCGGCGCCTTCTTCAGCTTCTGAGTGCTGTGCCACCTCTACCCCTT
CGCCAAAGGCCTCCTGGGACGCC

Homology of Contig U35_29568 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g36890.1	1216	2e-70	protein\|CSLD4 - cellulose synthase-like family D, expressed
Brachypodium v1_2	Bradi4g05027.1	1212	1e-77
Arabidopsis v10	AT1G02730.1	1181	5e-67	\| Symbols: ATCSLD5, CSLD5, SOS6 \| cellulose synthase-like D5 \| chr1:594697-598473 REVERSE LENGTH=1181