barSeed - Barley Seed Development Database

Probe CUST_26903_PI390587928

Source Contig U35_17598

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26903_PI390587928	Hv_44K_v2	TTAATCACCTTGAATCAGGTCATTTAGGTGGTTTGGGCATTGATGTTGCTTGGACGGAGC	980	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374038	3529	2e-24	3142 - 3201	100	60 / 60	plus	ABC08422 ABC35436
MLOC	AK249457.1	1244	2e-24	884 - 943	100	60 / 60	plus	ABC08422
MLOC	AK369373	1448	2e-24	985 - 1044	100	60 / 60	plus	ABC08422
MLOC	AK360121	1326	2e-24	762 - 821	100	60 / 60	plus	ABC08422
MLOC	MLOC_19285.1	937	2e-24	279 - 338	100	60 / 60	minus	ABC08422
Harvest21	ABC08422	1436	3e-25	981 - 1040	100	60 / 60	plus	ABC08422
Harvest21	ABC08421	699	3e-25	367 - 426	100	60 / 60	minus
Harvest35	U35_17598	1447	3e-25	981 - 1040	100	60 / 60	plus

Contig Sequence (1447 bp)

>U35_17598 1447 Hv_44K_v2
GGGTGTGACGTCCCCGTCTCCTCCGCCTAACCAAACCCGCCTAGCTGCTCTGTTGTCTCT
TTCGTATATAATGGCCGGCGCAAGATCGGCGGCAATCAGATTCACACACTCTTCGCTATT
CCTACTGTCTCGCGCCGCCGCAGCGGCAGCGACCCGCCGTACCCATCTCCCCCCCTCCTC
GAGAGATTATTCAAAGATGGCTAGTTCAGTTGGAATCAATGGCTACAGTGCTGTTACACG
GGTGCTATTCTGTGGGCACTATTGGCCTGCTTCTACTATTTATACGAAGGAGTACTTGCA
AAAGTATCCATTTATTCAGGTGGACGAAGTAGGTCTTGAGCACGTACCAGATGTTATTCA
AAACTACCATATATGTGTAGTGAAAAATAAATGTATAGATTCAGATATCATTGCCAAAGC
AACTAAGATGAAGATTATTATGCAGTATGGTGTTGGTTTAGAAGGTGTTGACATAAATGC
TGCTACAGAACATAAAATCAAAGTTGCACGGATACCTGGGAGTACTACAGGAAATGCAAC
CGCTTGTGCAGAAATGGCGATCTATCTAACTCTAGGTGTTCTGCGGAAGCAAAAGGAAAT
GAATGCTGCTGTCATTCGGAAGGACTTGGGCCTTCCAGTTGGAGAAACAATATTCGGGAA
AACAATACTTATCCTGGGGTTTGGAGCCATCGGCATGGAAATTGCCAAGAGACTAAGACC
ATTTGGAGTGAAAATTCTTGCTACAAAAAGAAATTGGTCATCAAATACAGCGTCTTGTGA
TCTTGATGGACTGGTTGACAAAAAAGGTGGTCCAGAAGATATGTACGAACTTGCTCGAGA
AGCTGACATAGTTATAACTTGCATGACGTTAAACAATGAATCAGTTGGGATCGTGAATCA
CAAGTTCCTGTCAACTTTGAAAAAGGGATCATATCTCATCAATATTGCCAGAGGACGCCT
TCTGGACTATACGGCTGTGTTTAATCACCTTGAATCAGGTCATTTAGGTGGTTTGGGCAT
TGATGTTGCTTGGACGGAGCCATTCGATCCAGAGGATCCAATTCTGAAATTTCCAAATGT
TATTATAACACCACACATTGCAGGAATCACGGAATACTCTTACAGAACGATGGCAAAGGT
TGTTGGTGATGTTGCCCTCAAGCTTCATGCGGGGGAGCCATTCAACGAAATAGAATTTGT
GAACTAGGCAAAGTGAGTAGATGGCGGCATTGTTGATTTAATTTAATACGTATAAATAGA
CCTAAAATTACCAAACAAAGGCAAATGTTATGGGTGATTGCATTATTGGAGAATCATAGG
AATTCAACAGGTTTATTTATGTAAAGCATTGTTGTCTGTTTTGATTGCAAACATCTGAAA
CTAGTTAGCTGCAAAAAAAAAAAAAAATTCTGCACTCTGTTGCATACAATCAACATCTGA
AGGCCAC

Homology of Contig U35_17598 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g16040.1	375	0.0	protein\|erythronate-4-phosphate dehydrogenase domain containing protein, expressed
Brachypodium v1_2	Bradi1g53060.1	378	0.0
Arabidopsis v10	AT1G72190.1	373	9e-134	D-isomer specific 2-hydroxyacid dehydrogenase family protein \| chr1:27167458-27169696 REVERSE LENGTH=373