barSeed - Barley Seed Development Database

Probe CUST_26901_PI390587928

Source Contig U35_43861

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26901_PI390587928	Hv_44K_v2	AATCGCTCTTGGCAGAGCAAGTGCATGATAACGTGTAAAGAGTAAAAGAAGAGAAGGAGA	25	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK377133	1354	2e-24	1283 - 1342	100	60 / 60	plus	ABC09688
MLOC	MLOC_41045.1	360	2e-24	76 - 135	100	60 / 60	plus	None
JLOC1	JLOC1_26791.1	401	8e-25	76 - 135	100	60 / 60	plus
Harvest21	ABC09689	908	3e-25	824 - 883	100	60 / 60	plus
Harvest35	U35_43861	564	3e-25	26 - 85	100	60 / 60	minus

Contig Sequence (564 bp)

>U35_43861 564 Hv_44K_v2
TTTTTTTTTTCTTTTTTTCAATCATTCTCCTTCTCTTCTTTTACTCTTTACACGTTATCA
TGCACTTGCTCTGCCAAGAGCGATTTGGCCACTAGAACAAAAAGAAAGCGAGAGGAAAGA
GGGAAAACAGCGGCTCCCCGCATCTGGATGCGAAGACGCTCGCACGAGGACGGAGTCCTG
AGAACGAAGCGCCCGACAGCCCACGGCGCCATTTTGCGCCCGGTGAGGCCACCCTCCCAC
GCTACCCGTCGGCGTCAAGCGACGACGAACGACAGGAAGCAACTCCGGCGATAGAACGCG
CATCGGGAAATCGATCACGAAACACTAATTCCGTTCAATTTTTGTTCTTCCCGTGATCTG
GAGATTAACTGCTTTTCTACACATAATATGTGAACATGGTGAGATGAACCGATGGTTGAA
GCATCAACCGAAAGAAATCCATGACCAAGGAAGAGAAAACCTCAATCAATCAAGAAGAAT
CATCAAATCATACAAACAGAAGAAGGTATCATGTCTTTCTCGCCATCACTGCAGGCAGCA
ACCTCGTCGAGGACGCGCGCATAA

Homology of Contig U35_43861 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None