barSeed - Barley Seed Development Database

Probe CUST_268_PI390587928

Source Contig U35_20067

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_268_PI390587928	Hv_44K_v2	ACAAGTGCTGTTCTACAGAGTTAGCAGAAACAATCCAGGCTACATCAAAGCCAATACCGA	572	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251305.1	1927	2e-24	977 - 1036	100	60 / 60	plus	ABC11822 ABC12247
MLOC	MLOC_28407.2	793	2e-24	198 - 257	100	60 / 60	minus	None
JLOC1	JLOC1_19062.1	764	8e-25	518 - 577	100	60 / 60	plus
Harvest21	ABC12249	646	3e-25	573 - 632	100	60 / 60	plus
Harvest35	U35_20067	646	3e-25	573 - 632	100	60 / 60	plus

Contig Sequence (646 bp)

>U35_20067 646 Hv_44K_v2
GACGGCTACCGTGCACTCCATGTTGCAGCTCAGTATGGCCAAACAACATTCTTGCATCAC
ATCGTCTCCAAGTATGGTGCGGACTTTGAAGCTTTGGACAATGACGGGAGGAGCTCTTTG
CACTGGGCTGCCTACAAGGGAAATGCAGATACAATTAGGTTACTACTGTTTATGGATGCT
AATCAAGTAAGGCAGGACAAAAATGGTTGCACTCCCTTACACTGGGCTGCTATAAGAGGA
AGTTTAGAAGTTTGCACCCTTCTTGTACATGCAGGCACCAAGCAGGAACTAACATTGAGG
GATAGCGGTGGGTTTACTCCTTCGCAACTTGCAGCAGACAAAGGTCAACGGCATCTTTCC
AATATACTTTCTAATGCTACAAAAGTAAGCTTTGGAGACAAGTACTGCTCAGGGAGGCTG
GGCAAGGTTGGATACGCACCTATCCTGTTTACTTATCTTGTTATCCTCGTGATCCTTTTC
CTGAAATCAATTGTTTTTGCATCTGATTTTTCTAGAATCACTGCTGCTGTTGGTCTTTGG
TCATGGGCTGCTATTTCTCTTGCCTTGGCGTCACAAGTGCTGTTCTACAGAGTTAGCAGA
AACAATCCAGGCTACATCAAAGCCAATACCGAGGGGCTTGATCCGA

Homology of Contig U35_20067 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g34860.2	443	7e-115	protein\|palmitoyltransferase TIP1, putative, expressed
Brachypodium v1_2	Bradi4g16522.1	562	5e-123
Arabidopsis v10	AT2G14255.1	536	1e-73	Ankyrin repeat family protein with DHHC zinc finger domain \| chr2:6036974-6040892 FORWARD LENGTH=536