- Probe CUST_26897_PI390587928
- Source Contig U35_29571
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_26897_PI390587928 | Hv_44K_v2 | GACTCATCGCATTGTCTTTATTCGAAATGTTTTTACCTTGATGAGATATTGAAGAACACC | 163 | GeneList: darkolivegreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.010 | 0.051 | 0.809 | 1.876 | 1.281 | 1.895 |
| Raw | 47.619 | 632.059 | 9532.463 | 33916.433 | 8175.213 | 13233.150 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_12874.1 | 712 | 2e-24 | 63 - 122 | 100 | 60 / 60 | minus | ABC28915 |
| JLOC1 | JLOC1_8662.1 | 388 | 8e-25 | 5 - 64 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC28915 | 240 | 3e-25 | 164 - 223 | 100 | 60 / 60 | plus | ABC28915 |
| Harvest35 | U35_29571 | 240 | 3e-25 | 164 - 223 | 100 | 60 / 60 | plus |
Contig Sequence (240 bp)
>U35_29571 240 Hv_44K_v2 GTCGGTCCATCGATCTCGCCTGTTGTTGTTGTTGTGTGTGATGTTGAGCAATTAATCCTC TAGGCTAAATAAGTGCTAATCGGGCGACTCATCCATCCATCTAGATACTGGACAAAAATG GAGAAAGGATAGGAGGACCGAATTAGCATGATCCGATGTTGTAGACTCATCGCATTGTCT TTATTCGAAATGTTTTTACCTTGATGAGATATTGAAGAACACCAAAAAAAAAAAAAAAAA
Homology of Contig U35_29571 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |