barSeed - Barley Seed Development Database

Probe CUST_26892_PI390587928

Source Contig U35_43867

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26892_PI390587928	Hv_44K_v2	TCTTGTGCTCTGTTTGCCGTCCACGCGAACAATTCCTACAAAGAAATATGATGGGGATGT	88	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.445	1.165	1.260	0.879	0.349	0.240
Raw	7319.830	9113.920	8923.150	9491.553	1342.560	1013.728

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC41075	416	3e-25	89 - 148	100	60 / 60	plus
Harvest35	U35_43867	416	3e-25	89 - 148	100	60 / 60	plus

Contig Sequence (416 bp)

>U35_43867 416 Hv_44K_v2
CAGCGGCGCAATGCCCACCGTGCTGTGCTTCTATGAGATTTATTGGCTCGCCCTGGAGCC
CTGGATAGTTTTGTAAACGCCTCCCACCTCTTGTGCTCTGTTTGCCGTCCACGCGAACAA
TTCCTACAAAGAAATATGATGGGGATGTGGCGACGCCGAGATCCGCGCCAAGCTCAAGGC
CGACGGCACGTTCCAGCAGAAGATGGAACTGGCGACACAGCAGGGCATCCATGAGTCGTA
CTACCGCGACATGATGGTGATGTTCGGCAAGTGGGAGTTCGACCCGATGAGCCTGCCGAA
GCCGCCATGCCCTGTCCACATCTGGCAGGGCGACGAGGACGGCCTGGTGCCGGTGGTGCT
GCAGAGGCACATCGCCAGCCGGCTCAGCTGGGTGAACTACCACGAGCTCCCCGAGA

Homology of Contig U35_43867 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g02514.2	356	1e-52	protein\|hydrolase, alpha/beta fold family protein, putative, expressed
Brachypodium v1_2	Bradi1g77460.1	360	1e-55
Arabidopsis v10	None