barSeed - Barley Seed Development Database

Probe CUST_26890_PI390587928

Source Contig U35_29575

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26890_PI390587928	Hv_44K_v2	CCACGGCGCACCGGGGCTCTTTCCGGTGCCGCTGGCACCGCGCCAGCTACGCGTGGGGCA	239	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.071	0.242	0.698	1.530	2.437	3.542
Raw	15.248	81.938	200.732	662.465	385.897	614.101

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5492.3	1127	7e-23	657 - 716	98	59 / 60	minus	None
MLOC	MLOC_5492.1	2445	7e-23	2104 - 2163	98	59 / 60	minus	None
Harvest21	ABC15748	1162	1e-23	240 - 299	98	59 / 60	plus
Harvest35	U35_29575	299	3e-25	240 - 299	100	60 / 60	plus

Contig Sequence (299 bp)

>U35_29575 299 Hv_44K_v2
CCGGAAAACACCAGAACCTGGTTCCCTTCCGTTNCGTTNCGTCGCCTCTTTATGCGCGTG
GCCGGGTGGACAGAGCCCTCTCTGCAGCTTTAGCCGTCGCCAGAGCATGTGCCATCCGGG
GCTGCCGCCTCTGCCGCCGGGCTGCGCGGCCAGGCGGCGGCAGCGGCCGGCGGGGGTCGT
CGCGCCCACGCCTTCGCCGCAGCGACAGCCACACCGGCATCACTTCTGCGTGTGCTCGCC
CACGGCGCACCGGGGCTCTTTCCGGTGCCGCTGGCACCGCGCCAGCTACGCGTGGGGCA

Homology of Contig U35_29575 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None