barSeed - Barley Seed Development Database

Probe CUST_26889_PI390587928

Source Contig U35_29576

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26889_PI390587928	Hv_44K_v2	ATCAGCGTCTCAGGGGATGGTGAATGGGCTTGGCTTCCATCCCGATCATGGATGGTCTCA	465	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.023	0.027	0.569	1.419	2.162	5.619
Raw	12.202	22.102	444.211	1693.052	869.044	2556.917

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357968	1283	2e-24	495 - 554	100	60 / 60	plus	ABC15377
MLOC	MLOC_69156.1	1677	2e-24	567 - 626	100	60 / 60	plus	ABC15377
JLOC1	JLOC1_45816.1	1474	8e-25	583 - 642	100	60 / 60	plus
Harvest21	ABC28920	596	3e-25	466 - 525	100	60 / 60	plus
Harvest35	U35_29576	596	3e-25	466 - 525	100	60 / 60	plus

Contig Sequence (596 bp)

>U35_29576 596 Hv_44K_v2
CGGACACACACTGACCGACATGGTGTCTCACTCTCACCTCGAGATGGGCGGCGCGGCGGG
GATCAAGCTCTTCGGCAAGGTCATCACGCGGCAACCGACACGCCAGGGTACAGATGGCGG
CGGCGGTGGTGTGCCATCCAAGGCACAGCAGGCGCCATCCATGTCGTCGTCGTCGTCATC
GTCGGGGCGCGGGAGCGTGGAGCAGCTGGAGGAGGCCGCGAGGGCGCGCGCCGCGGCTGC
GGAGGCGCGGCTGCCGTGCCCGAGGTGCCGGAGCGAGGACACCAAGTTCTGCTACTTCAA
CAACTACAACGTCAACCAGCCGCGGCACTTCTGCCGAGCCTGCCACCGCTACTGGACGGC
CGGCGGCGCCATCCGCAACGTGCCCGTCGGCTCCGGCCGCCGCAAGAACAGGCCGGTGCT
GCACGGTGCCTCGACGGTGATGAGCGCCGACAACCCCTTGGCAGGATCAGCGTCTCAGGG
GATGGTGAATGGGCTTGGCTTCCATCCCGATCATGGATGGTCTCAGGTCGTGCCGTCGCC
GGCTTACCTCGGCCACGGAGAGATGGAGCAGTGCTGGTGGCTCGTTCATCAGTACC

Homology of Contig U35_29576 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g19930.1	205	3e-61
Arabidopsis v10	None