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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_26886_PI390587928Hv_44K_v2GTGAAGATCAGGATGCAATTGAAAATATGACTGCACAACAGACGACCCCAAGATCAACTT578GeneList: purple
MasterList: Starch_synthesis_Function_Probe_Module



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.0610.1170.9211.8420.9631.262
Raw 4.65516.386120.767381.64968.64197.825



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_56801.422397e-23327 - 3869859 / 60minus None
MLOCMLOC_56801.320637e-23486 - 5459859 / 60minus None
MLOCMLOC_56801.222357e-23499 - 5589859 / 60minus None
MLOCMLOC_56801.115447e-23499 - 5589859 / 60minus None
Harvest21ABC289246383e-25579 - 63810060 / 60plus
Harvest35U35_295796383e-25579 - 63810060 / 60plus



Contig Sequence (638 bp)

>U35_29579 638 Hv_44K_v2
TTTAGGATTGCGTGTACTAATGGATGTTGTCCATAGCCATGCAAGCAAAAATGTGACGGA
TGGTCTAAATGGCTATGATGTTGGACAAAGCGCACAAGAGTCATATTTTTGCACAGGAGA
CAGGGGCTATCATAAACTGTGGGATAGCCGTCTGTTCAACTATACGAATTGGGAGGTATT
AAGGTTTCTTCTTTCCAATCTGAGATATTGGATGGATGAATTCATGTTTGACGGCTTCAG
ATTTGATGGGGTTACATCCATGCTATACAATCACCATGGCATCAATATGACGTTCACTGG
AAATTATAAGGAGTATTTTGGTTTGGATACCAATGTTGATGCAATTATTTACATGATGTT
GGCTAACCATTTAATACACAAACTCCTGCCAGAAGCAACTATTATTGCAGAAGATGTTTC
TGGCATGCCAATTCTTTGTCAGCTGGTTGATGAAGGTGGAGTAGGGTTTGACTATCGCCA
GGCTATGGCTATTCCAGATAGATTGATCGACTACTTTAAGAACAAAGATGCCCATGAATT
ACCAATGAGTGGAATATCACAGACTTTGACTAACATGAGTGAAGATCAGGATGCAATTGA
AAATATGACTGCACAACAGACGACCCCAAGATCAACTT



Homology of Contig U35_29579 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os06g51084.87565e-112protein|1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed
Brachypodium v1_2Bradi1g29850.27621e-115
Arabidopsis v10AT2G36390.18586e-75| Symbols: SBE2.1, BE3 | starch branching enzyme 2.1 | chr2:15264283-15269940 FORWARD LENGTH=858