barSeed - Barley Seed Development Database

Probe CUST_26883_PI390587928

Source Contig U35_31892

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26883_PI390587928	Hv_44K_v2	GGCGTCGGCGACGTCTCCCTCGCCAAGCGCTCGCGCATCATCGAGCTCTCCCGCCGATTA	170	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK353762	2241	2e-24	191 - 250	100	60 / 60	plus	ABC06228
MLOC	AK363899	2150	2e-24	178 - 237	100	60 / 60	plus	ABC06228
MLOC	MLOC_53508.1	107	3e-22	47 - 102	100	56 / 56	plus	None
MLOC	MLOC_53509.1	261	3e-22	201 - 256	100	56 / 56	plus	None
Harvest35	U35_31892	230	3e-25	171 - 230	100	60 / 60	plus

Contig Sequence (230 bp)

>U35_31892 230 Hv_44K_v2
GTAGAACGCCGTACCTCCACCACCACCCGCTGTTTCCCCCGTCGCCGTCGTCATCGCCCG
TCCGTCGGGGCGTGCGGCGCCGCCGACGTTGCCCGTTCGTCCCCGGCGTCTGGCCACCGA
GGCTTGAGGTCCCGCCGGCCGCAACCATGTGCGGCATCCTCGCCGTCCTCGGCGTCGGCG
ACGTCTCCCTCGCCAAGCGCTCGCGCATCATCGAGCTCTCCCGCCGATTA

Homology of Contig U35_31892 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None