- Probe CUST_26882_PI390587928
- Source Contig U35_31893
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_26882_PI390587928 | Hv_44K_v2 | AATGAGATTGTTGAAAGCAGAGGAGCTGTTTCGGAAATTGCTTGAGGGTGGGTCCAAGAA | 334 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.318 | 1.087 | 1.085 | 0.971 | 0.628 | 0.639 |
| Raw | 60.292 | 71.958 | 69.807 | 95.612 | 21.658 | 25.136 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK368545 | 1310 | 2e-24 | 442 - 501 | 100 | 60 / 60 | plus | ABC23231 |
| MLOC | AK366620 | 1121 | 2e-24 | 161 - 220 | 100 | 60 / 60 | plus | ABC23231 |
| MLOC | MLOC_55378.17 | 4556 | 2e-24 | 4236 - 4295 | 100 | 60 / 60 | plus | ABC00911 ABC17473 |
| MLOC | MLOC_55378.18 | 4545 | 2e-24 | 4225 - 4284 | 100 | 60 / 60 | plus | ABC00911 ABC17473 |
| MLOC | MLOC_55378.14 | 4592 | 2e-24 | 4439 - 4498 | 100 | 60 / 60 | plus | ABC00911 ABC17473 |
| MLOC | MLOC_55378.15 | 4541 | 2e-24 | 4388 - 4447 | 100 | 60 / 60 | plus | ABC00911 ABC17473 |
| MLOC | MLOC_55376.1 | 243 | 2e-24 | 35 - 94 | 100 | 60 / 60 | plus | ABC23231 |
| MLOC | MLOC_55378.23 | 1303 | 2e-24 | 1092 - 1151 | 100 | 60 / 60 | plus | ABC23231 |
| MLOC | MLOC_55378.24 | 1176 | 2e-24 | 965 - 1024 | 100 | 60 / 60 | plus | ABC23231 |
| MLOC | MLOC_62634.3 | 1101 | 3e-21 | 784 - 843 | 97 | 58 / 60 | plus | None |
| JLOC1 | JLOC1_35712.3 | 260 | 8e-25 | 49 - 108 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_35712.2 | 390 | 8e-25 | 179 - 238 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_35712.1 | 521 | 8e-25 | 310 - 369 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_41003.1 | 771 | 2e-21 | 675 - 734 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_31893 | 468 | 3e-25 | 335 - 394 | 100 | 60 / 60 | plus |
Contig Sequence (468 bp)
>U35_31893 468 Hv_44K_v2 AGCTAGGCTTACGGCCGCCGGCCGACCGACCCCGCCCTGCCTCGTCGCAGAACAGCGCCC CCCTCGCCGGCCGACCCCGGTTCGCCGCAGCTCGACCCCGGCCGTCCCCCGGACGCCCCC TCCCAGCTCCGTCGCCAGACGACGGCCTCGCCGCCCGACCCCGCGCTCGTCGCACGCCCC CTTCCAGCCGCCGGTGGACTTCCCTGTTTTCAAATCCTAGATCTGACACTGCTCGCCGCC ATCTCCCGCTCCAAGGTCTCTCTGATTAGACGCCGTCGACCAGCTCCTAGCCCTAGGTCG CCGGCACTCCAAAGGCTCCTCTGAGGAGGTGTGCAATGAGATTGTTGAAAGCAGAGGAGC TGTTTCGGAAATTGCTTGAGGGTGGGTCCAAGAAGAAGGCTCGGCTACTAGGGCTCGATG TCGGCAGTAAATACGTCGGGCTGGCAGTTTCTGACCAGCAAACAGGAT
Homology of Contig U35_31893 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |