barSeed - Barley Seed Development Database

Probe CUST_26878_PI390587928

Source Contig U35_31898

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26878_PI390587928	Hv_44K_v2	ATCGTTCCCGTGGACTCATAGGTACGCCTCTTCAGTCGATCGTCCTTGGCCAAGAACCGA	159	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370886	3249	2e-24	118 - 177	100	60 / 60	plus	ABC05724
MLOC	MLOC_52639.1	2718	2e-24	411 - 470	100	60 / 60	plus	ABC49960
MLOC	MLOC_52639.3	2037	2e-24	150 - 209	100	60 / 60	plus	None
MLOC	MLOC_52639.2	3512	2e-24	261 - 320	100	60 / 60	plus	ABC17091 ABC39570 ABC49960
JLOC1	JLOC1_33749.2	2834	8e-25	140 - 199	100	60 / 60	plus
JLOC1	JLOC1_33749.1	2829	8e-25	140 - 199	100	60 / 60	plus
Harvest35	U35_31898	450	3e-25	160 - 219	100	60 / 60	plus

Contig Sequence (450 bp)

>U35_31898 450 Hv_44K_v2
AAGTTTGCACGTCTACCCTTCTCCTTCTCCTTGCCTCCTTCACAGTCGCAGTCGCGGCGG
TCTCCTCGTCCCCCGGGTCCGCCCCACCAAATACGCGGAACCAACACTAGCGCGCGCCCG
CCCGCCCGCACGCTTCGTCCCCTCGCCATTAACTACCAAATCGTTCCCGTGGACTCATAG
GTACGCCTCTTCAGTCGATCGTCCTTGGCCAAGAACCGAGTCCCCGACGGAGTCGGAGCA
GGAAGCCATGCCGTTGCCGCGGGGCAAGCACAGGAGGAAGGGCTTCAGGTCGCACCTCGA
GCAGGAGGTGCTGAGGCTGCAGGAGGTGCTGCGGGAGGAGACGGCGCTGCACGCCATCCT
CGACAACGCGCTCGACCACGCCGCCGTCACCCTCGCCGACATGTCATACCCTCCCACCCA
CGCCCAGGAGCTGCTCTCCAGCATCTCCGC

Homology of Contig U35_31898 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None