barSeed - Barley Seed Development Database

Probe CUST_26869_PI390587928

Source Contig U35_29583

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26869_PI390587928	Hv_44K_v2	TGCTTTAGCTGCGTCAGATACTCCATGCTTTAATAGTTCTTTAATTGTATTGTCGATGAA	572	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.026	1.151	1.745	1.305	0.580	0.399
Raw	16.363	27.149	38.973	46.195	5.418	3.748

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC28929	637	3e-25	573 - 632	100	60 / 60	plus
Harvest35	U35_29583	637	3e-25	573 - 632	100	60 / 60	plus

Contig Sequence (637 bp)

>U35_29583 637 Hv_44K_v2
GTCCTCGATCACTTTTCCAATTACATGGCTCGCATTTTCACCGCCGTCGTCGACGGCTCG
CTGGTCCTCCGCCGTGACGGTTTCAGAGGCTTCTCCCAACCCTATCCCTTTTCTCATTCG
ACAATGGTCTAGTTAGCGCCACTGTGCCGGAGGACCATCTAGCCTTCTAGGCCTTCCACA
CAGTCGATCCTGTGGAGCTGTTCAAGCACGCACCATCCTTGATGCCGACGTTGATCACCC
TAGGCAGACTACACCAACTATCCCCTGATAGATAAGAAGGAGTCTAAGAAGAGAGCAACG
GCCGGCTCACTGTGTGTCCAGTGGTTCGCCGTGGCGTTGGCACCCGTGCCATTGCCTCTG
CACTGGCCTAAGATCGATGAGAGACTGATGCTGCTGCGATGATAAGCACCGGTGATGTGT
GTACTTGCACTGAGCCAACTAAAGCTAACATTGATTCTGTATCTTCTTCCTTGGGTGCAA
GCATTGGGAGTACTAAATGAATCAATGGTTGAACGACCTCATCCATCCACTGAAAGCATT
ACAGCTCTCCACATGCCATTGATTAATCCATCTGCTTTAGCTGCGTCAGATACTCCATGC
TTTAATAGTTCTTTAATTGTATTGTCGATGAACATAC

Homology of Contig U35_29583 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None