- Probe CUST_26866_PI390587928
- Source Contig U35_29586
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_26866_PI390587928 | Hv_44K_v2 | CCAGCCTGATTGTACGTTAATTTGTTGTATCAGAGCAAATAAAACCTTTGATTGTTTCTC | 313 | GeneList: lightgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.010 | 0.011 | 0.407 | 2.758 | 5.001 | 14.096 |
| Raw | 3.043 | 8.996 | 410.802 | 4251.070 | 2639.460 | 8221.300 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_57674.1 | 527 | 7e-23 | 459 - 518 | 98 | 59 / 60 | plus | ABC28932 |
| Harvest21 | ABC28932 | 390 | 3e-25 | 314 - 373 | 100 | 60 / 60 | plus | ABC28932 |
| Harvest35 | U35_29586 | 390 | 3e-25 | 314 - 373 | 100 | 60 / 60 | plus |
Contig Sequence (390 bp)
>U35_29586 390 Hv_44K_v2 GCCTATGATAGGGCATGCAGATGGAGATACTTGGGGTATAACCGTATAAGTATATTTGGA GGAGCATCATTCGCAGAGGCAAGATGATGACGATGCGGCAGGAGCTCTTCTTCTTCATGC CGTAGGAGAGGTCGTCCTCGTCTCGCATGGAGTTCCCTCATTCACACTTCTTGGCTCTCT AGTTTGATGTTGTTCAGTTCAAGTCGGGAGGAGGGGAAATGGGGTTCCCTCATTCGTCAT CCCTGTGATCTTCCTTGTGTTGTTCCTTGGGGAGATGGGGTTGCATCTCCTTCTCCCCTT GCTGCGTGTGGTTCCAGCCTGATTGTACGTTAATTTGTTGTATCAGAGCAAATAAAACCT TTGATTGTTTCTCAAAAAAAAAAAAAAAAA
Homology of Contig U35_29586 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |