barSeed - Barley Seed Development Database

Probe CUST_26865_PI390587928

Source Contig U35_29588

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26865_PI390587928	Hv_44K_v2	CCCAACCCCAACAACCATTCCACCAACAAGCAGAATTAATAATTCCCCAGCAATAAAAAA	455	GeneList: black MasterList: Hordein_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.066	0.033	0.312	2.036	5.013	6.835
Raw	9.425	5.203	62.854	573.259	529.336	805.466

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_32260.1	502	6e-21	119 - 171	100	53 / 53	minus
Harvest21	ABC28935	523	3e-25	456 - 515	100	60 / 60	plus
Harvest35	U35_29588	523	3e-25	456 - 515	100	60 / 60	plus

Contig Sequence (523 bp)

>U35_29588 523 Hv_44K_v2
GCAACCACAACAACCATTTCCCCAACCTGAACAACCATTTCCCCAGCAACCACAACAACC
ATTCCCCTGGCAACCACAACAACCATTTCCGCAGCCCCAACAACCAATTGTGCAGCAACC
ACAACAACCAGTCTCGCGGCAACCACAACAAATAATTCCCCAGCAACCACAACAACCATT
CCCTCTGCAACCACAACAACCATTCCCCAAACAACCACAACAACCATTTCCCCAACAACC
ACAACAAATAATTTTCGAGCAACCCCAACAAACATGGCCTCTGCAACCTCAACAGCCATT
TCCCCAACCCCAACTAGTCCCCCAGCAGTGACCCCAACAAGCATCCCCCCTACAACCGCA
ACAACCATTTCCCCAGGAATTAGAACAAATAATTCCCCAACAATCATTCCCTCTACAACC
ACAACCATTCCCCCAACAACCACAACAACCATTTCCCCAACCCCAACAACCATTCCACCA
ACAAGCAGAATTAATAATTCCCCAGCAATAAAAAAAAAAAAAA

Homology of Contig U35_29588 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None