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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_26860_PI390587928Hv_44K_v2TTTGGTCCCCTGTCTGTAACTTACATGACTCTCATTTGGTAACAACTGAAATTTGCGCAA556GeneList: plum1
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.2660.1940.6751.4571.5522.240
Raw 45.02251.215166.707553.365203.937323.009



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
JLOC1JLOC1_36994.118114e-231751 - 18119860 / 61plus
Harvest21ABC289386193e-25557 - 61610060 / 60plus
Harvest35U35_295906193e-25557 - 61610060 / 60plus



Contig Sequence (619 bp)

>U35_29590 619 Hv_44K_v2
CAGCCATTGAACTTAGGTGCTGCCGCTTCAGATGTCCAAGCAAAAATTGTTGCTCAAGAA
CAAAAGAACCTCAGTTTGTGTAATCATGCCAGCCCTGCCGTGCCAAAAGAGTTTCTGGAG
ATTGCTGAGAGCCTTTTAAGCGATACACATGGCCCGCCATCCGCGGATGAGAAGTATCTG
ATGGCGAGAGTGGACTCGCTTTGCAATTTGATTGAGAAAGGTACGGCGCCATCCACCGTA
TCCGTTCCTGAGCGCAATGATACCATTGTTGCAGGAGAAGTAGGTTATGATGCCTTTGAC
GAGGAGCTCAGATTTTGTTTCGAAGACGAAGAACAACGGGCACCTGCTGGGAGAACTGTG
GATGGTGGCACAGGACCGTCTGCCATCGCTAGAAAGGATTCCTTGGAGTTTGCGGATATG
TTGGAGAACCTCCCGCGCATACCATCTATGTCAGAGTTTTTGTTCGACATAGCAGAGGGT
TAAGAGAACTCCGGTTAGCACTCCGGATTTGGAAATGTTCAATCATGAGGAACTTTGGCT
TCCTTTTTAGACTTGTTTTGGTCCCCTGTCTGTAACTTACATGACTCTCATTTGGTAACA
ACTGAAATTTGCGCAACCC



Homology of Contig U35_29590 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None