barSeed - Barley Seed Development Database

Probe CUST_26853_PI390587928

Source Contig U35_43888

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26853_PI390587928	Hv_44K_v2	TCCGGCGTCATCCGGATCGCTTACCTGCCCGACCCGGCCATGGAGGCGGTCCTCGACCAG	447	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.259	0.411	0.942	3.471	6.175	6.880
Raw	8.040	18.098	39.569	146.943	148.214	173.187

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248370.1	2483	2e-24	772 - 831	100	60 / 60	plus	ABC09476
MLOC	MLOC_50161.1	503	2e-24	267 - 326	100	60 / 60	minus	ABC09476
MLOC	MLOC_49213.1	634	3e-21	309 - 368	97	58 / 60	plus	ABC09476
JLOC1	JLOC1_32034.1	503	8e-25	267 - 326	100	60 / 60	minus
JLOC1	JLOC1_31523.1	547	2e-21	304 - 363	97	58 / 60	plus
Harvest21	ABC09476	2125	3e-25	448 - 507	100	60 / 60	plus	ABC09476
Harvest35	U35_43888	527	3e-25	448 - 507	100	60 / 60	plus

Contig Sequence (527 bp)

>U35_43888 527 Hv_44K_v2
CCCGAGTACATCCACCCCTACTCCGTCCGCTCCGCCGCGGCGGGGCTCACCGTCTGCTAC
CCTTCGCGCAACCACTCCCCGTCCTTCGACATCCAGACCTTCGCCGCCGACCTCACCGTC
TCCTCCCCGTCCGACGCCGCCGCGGCCGGACAGCCCCACCGCGTCGTCGCCTTCGACGAC
CTCTCCGTCACCCTCGACTTCTCCCCGTCGCTCCGCGCCTTCCTCGTCCGCGGCTGCCCC
TTCGTCACCGTCGCCACCGCGGAGGCCGCGGGACCCGTCGACGTCTCCGTCGCCTCTGTC
CACGCCTTCCTCGAGGCCGCGCCCTGCGACGACGCGCGCACCAAGTGGCGCCTTCGGATG
AACAGCGGCCAGACCTTCCTCCTCTACGCCTCCGCGCCCATCGGCCTGCAGCAGGCCAGC
GTCACGCAGCTGGCGGCCCCGGGGTTCTCCGGCGTCATCCGGATCGCTTACCTGCCCGAC
CCGGCCATGGAGGCGGTCCTCGACCAGTACAGCCGGTGCTACCCGAC

Homology of Contig U35_43888 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g21210.1	741	7e-98	protein\|beta-glucan-binding protein 4, putative, expressed
Brachypodium v1_2	Bradi4g29390.1	686	1e-105
Arabidopsis v10	None