barSeed - Barley Seed Development Database

Probe CUST_26851_PI390587928

Source Contig U35_43889

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26851_PI390587928	Hv_44K_v2	CCCGGAACTTAGTCGAAACATCAATATAGGACAGTTGAATATTTAAATGCATTTTCCTAG	474	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63742.1	4729	2e-24	4359 - 4418	100	60 / 60	minus	ABC16154 ABC50346
MLOC	MLOC_63742.4	1699	2e-24	1212 - 1271	100	60 / 60	minus	ABC16154 ABC50346
Harvest21	ABC41140	552	3e-25	475 - 534	100	60 / 60	plus
Harvest35	U35_43889	552	3e-25	475 - 534	100	60 / 60	plus

Contig Sequence (552 bp)

>U35_43889 552 Hv_44K_v2
CTTCCCCGCTCGCCGTCTCCCGGTGGCCGCCTCCGCGGCTCCCAAGGGCGCGGCGGCGTC
GGAGGCGGCGAGGGAGCGCCGGCGTTTCCTGGAGCGTTACGGCCTCAACCCCGATGACTT
CGAGGAAGACGCAGAGCCGGATCCCAGGGAAGAGCGGAGGAGAGAGAGGCGGATGCGGCG
GTCGGGTAGAGGGGAGGAGGAGGCCGCTGTCGCTCCTGCCAGGCCGGTGGAGCGCCGGGA
GACTCATAAGATGCTTCAGGTACTAGCTGGGAAAGTACGCAGAAGAAAATTACTATCACC
AAAAGATAGGAATGTTCGTCCGATGATGGAAGTTGTCCGAGGAGCAGCCTTTGACATTTT
ACAATCAGCTGGTGGTTCTCCTGCTTCACTCAAACCTGGTTTGTGGTTAGACTTGTACAG
TGGTACTGGATCTGTTGGAATTGAAGCCATGAGCCGAGGCTGTTCAGAGGTTTTCCCGGA
ACTTAGTCGAAACATCAATATAGGACAGTTGAATATTTAAATGCATTTTCCTAGATCAAG
TTGTGGTGTATT

Homology of Contig U35_43889 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None