barSeed - Barley Seed Development Database

Probe CUST_26846_PI390587928

Source Contig U35_43890

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26846_PI390587928	Hv_44K_v2	TTTGCCGGCTGTTTTGCTAAAATAAATCCGGTGCTTGTGTGTGGCTACTGTAGGCTACTT	298	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20748.1	989	2e-24	293 - 352	100	60 / 60	plus	ABC04901 ABC04902
Harvest21	ABC04902	832	3e-25	475 - 534	100	60 / 60	minus	ABC04902
Harvest35	U35_43890	482	3e-25	299 - 358	100	60 / 60	plus

Contig Sequence (482 bp)

>U35_43890 482 Hv_44K_v2
TCTCGTCTCGCCGGGAGAGGATAGGCACGGGACAGGGCGGAGAGAGGAAGCACAGCTGAT
CGCAGCCGGAGAACCGCCCATCCGCCATGAGCGACGGACAGGGCAATGCTCCTCCTGGAG
GTACGTATCCATCCGCTGTCCCCATAGCTTTCTCGCTCTGCTCTGTGTGAAATGAAAGCT
TGGTCAACTCGTCGATCCACCTCTGGGAGAGACGGAGCGGTGGATTAATTAGCACAACCA
TGTGTTAAATCTGATGCCGGAACCAAGATTTCGGTCGCCTCCCTCAGTTCCATCGACCTT
TGCCGGCTGTTTTGCTAAAATAAATCCGGTGCTTGTGTGTGGCTACTGTAGGCTACTTCA
TCGGCCGTCCGGCAAACACCGACGAGCCCAAGGAGAAAGAACCGCCGCAGGCCCTCCCTG
AGCCTGCTCCGGCTGTGAACAATCTTCCTGGTGATTACTTCGTCGGCCGCCCGTCAAACC
AC

Homology of Contig U35_43890 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None