barSeed - Barley Seed Development Database

Probe CUST_26841_PI390587928

Source Contig U35_43897

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26841_PI390587928	Hv_44K_v2	AATCTCGGGCCAGCAGGAAAGGCTCATCACCAGCGTCGTCTTCGCCGGGATGATCATCGG	385	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.489	0.634	1.080	1.182	1.141	1.523
Raw	6.254	11.456	19.155	32.940	10.999	16.313

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248763.1	2836	7e-23	363 - 422	98	59 / 60	plus	ABC41162
MLOC	AK360936	1776	7e-23	363 - 422	98	59 / 60	plus	None
MLOC	AK354859	2835	7e-23	323 - 382	98	59 / 60	plus	ABC41162
MLOC	MLOC_16999.1	1119	7e-23	643 - 702	98	59 / 60	minus	None
MLOC	MLOC_16999.2	891	7e-23	413 - 472	98	59 / 60	minus	None
MLOC	AK365301	2872	3e-21	323 - 383	97	59 / 61	plus	ABC41162
JLOC1	JLOC1_11744.1	1098	4e-23	638 - 697	98	59 / 60	minus
JLOC1	JLOC1_11743.1	916	4e-23	442 - 501	98	59 / 60	plus
Harvest21	ABC41161	465	3e-25	386 - 445	100	60 / 60	plus
Harvest35	U35_43897	465	3e-25	386 - 445	100	60 / 60	plus

Contig Sequence (465 bp)

>U35_43897 465 Hv_44K_v2
TCAACGCCCTACTCATCGCCGGACAAGGTGATAAGCTGACGCCTGACGGCACAGGGCGCT
CTCCACCGGCTCCATACCCTCCTCCCCCAGCCCTCCGCCGAGTCGCGCCTCATCTCCCAC
CGGCGCGGCGGCGCTTGCGCCGAAGTCTCCCGCCAGTCAACCGCTGTGCGCCGTGCTGCA
GGTTTCTTTGGAAGAGAATGGCGGGAGGCAGCGAGGCCAGGGGCGGTGAGTGCTGCTACT
ACACGACGGACGACGCGCTGTCCCAGGTGGGCTTCGGGAGGTTCCAGGCGCTGGTGCTGG
CCTACGCCGGCGTGGGCTGGACCGCGGAGGCCATGGAGATCATGATGCTGTCCTTCGTCG
GCCCGTCCGTGAAGGACGAGTGGGGAATCTCGGGCCAGCAGGAAAGGCTCATCACCAGCG
TCGTCTTCGCCGGGATGATCATCGGGGGCTGCCTCGGGGGCGTCA

Homology of Contig U35_43897 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None