barSeed - Barley Seed Development Database

Probe CUST_26840_PI390587928

Source Contig U35_43898

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26840_PI390587928	Hv_44K_v2	GAAATTCATCTTTGAATTATTGAGGGGAAAAGGGAACTGAAGATTCATGTTGCACCTAAA	14	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72190.2	2071	7e-23	1762 - 1818	100	57 / 57	minus	ABC41162
MLOC	MLOC_72190.3	1645	7e-23	1353 - 1409	100	57 / 57	minus	ABC41162
MLOC	AK248763.1	2836	3e-21	1450 - 1506	98	56 / 57	plus	ABC41162
MLOC	AK365301	2872	3e-21	1452 - 1508	98	56 / 57	plus	ABC41162
MLOC	AK354859	2835	3e-21	1451 - 1507	98	56 / 57	plus	ABC41162
JLOC1	JLOC1_48020.2	2127	4e-23	254 - 310	100	57 / 57	plus
JLOC1	JLOC1_48020.1	1722	4e-23	254 - 310	100	57 / 57	plus
Harvest21	ABC41162	497	3e-25	15 - 74	100	60 / 60	minus	ABC41162
Harvest35	U35_43898	497	3e-25	15 - 74	100	60 / 60	minus

Contig Sequence (497 bp)

>U35_43898 497 Hv_44K_v2
TTTTTTTTTTTTTTTTTAGGTGCAACATGAATCTTCAGTTCCCTTTTCCCCTCAATAATT
CAAAGATGAATTTCAGTATCATTTGGGCTTAGCTACACTTCTTCAAAAAAGCAGCTTGCT
TTGCTTCACAGAACAAATTCACCATGATATTCCCCTAAAGTTTACTTCATATAGATGAAA
CAGAACCCTATATGCACTGTTTTTAGGAAAACGTTTAAAATCAACCGGCTGATTTCTCTG
CAAATCAGCCGGGTCTTCCGCACGCCACGCGTCGTGGTCCACGCACCACGCGAGACACCC
ACATGCTGCCTCTCCTGTTTCTTTTTTTTACTCCCAACCTTATCTCTTCCCCTCCTAAAG
CCAGATTCATTTCTACTTCGGCTTCTACCTCCATCCCCATGCTTCGCCTTTCCTCATCAC
CCCGGCCCTCGTCGGACCAACCCACGGGGCGGCTTTTGCAGCACCCGGTGTCAAGCTCAC
ACTCCGGTGGCGGGCTT

Homology of Contig U35_43898 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None