barSeed - Barley Seed Development Database

Probe CUST_26837_PI390587928

Source Contig U35_2802

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26837_PI390587928	Hv_44K_v2	CAAAAATAACTTAAGTTCTGCTATTGACCCGAGTCAGACTTCATTAAATTTGACCCTACT	986	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74291.4	1377	2e-24	1310 - 1369	100	60 / 60	plus	ABC06921
JLOC1	JLOC1_49505.2	1720	8e-25	1650 - 1709	100	60 / 60	plus
JLOC1	JLOC1_49505.1	1132	8e-25	1062 - 1121	100	60 / 60	plus
Harvest21	ABC06921	1134	3e-25	1011 - 1070	100	60 / 60	plus	ABC06921
Harvest35	U35_2802	1110	3e-25	987 - 1046	100	60 / 60	plus

Contig Sequence (1110 bp)

>U35_2802 1110 Hv_44K_v2
GCCAACCAACAACCAATTCCCCAATCCGCCTCCTCGCCCGGCTTCAAGAGGGCCCTAATC
CGGCGTCGAATCCGATGGCGGCCAGCGCCGGCAGCAAGATCCGCAACGCCAAGCTGGTTC
TTCTCGGCGATGTGGGTGCTGGGAAATCCAGCCTGGTGCTTCGGTTCGTAAAAGGACAAT
TTGTTGAGTTCCAGGAATCGACAATTGGAGCGGCTTTCTTCTCTCAAACACTGGCTGTTA
ATGACGAGACTGTGAAGTTTGAAATCTGGGATACTGCTGGGCAGGAGAGGTATCATAGCT
TGGCCCCCATGTACTATAGGGGTGCTGCCGCAGCCATAGTTGTCTATGACATCTCGAACC
AGGCATCCTTCACCCGAGCAAAGAAATGGGTTCAAGAACTTCAAGCTCAAGGAAACCAGA
ATACAGTAGTGGCTCTTGCTGGCAACAAAGCTGATTTGCTAGAGGCGAGGGAGGTTCAAA
TAGAGGAAGCCAAGACATATGCGCAGGAGAATGGCCTCTTCTTCATGGAAACGTCTGCCA
AGACTGCAACCAATGTGAATGACATATTTTATGAGATTGCGAAGAGACTGCTGCAAGGGC
AGGCGGCGCAGAACCCACAGGCGGCGGGGATGGTTCTCTCTTCGTGCTGCTCCTGAAGCA
CAAGTTTTGGCCGCATTTGCCGTCTGTATGAAATTTAGGAGAGGGATTTCGGCAAGCATT
TGTCGTGCGGCTTCGTGCCGCTCTTGATCTTGTGGCTGCCTTCCTGGCTGATCTGATATA
CTCTAGCACCACCGCGCCTGCCTGACACTTTACTTTTCCGTTCGTGCGTTTGTCGTGTAA
ATGCCCACACTGGAATGCCCCTGCAGATATCGCAATTCGCAAGTGAGAGTTACCTGCAAA
GTGGTTGATTTTGTCTTGCTTTGCTCCCCAAGTTTGATGTTCAGGGAGTATGTCCCCCAG
CAATTGTTAGTTTGCTCCCTTCGTTTCAAAAATAACTTAAGTTCTGCTATTGACCCGAGT
CAGACTTCATTAAATTTGACCCTACTTTATATAAAAATATATCAACATCTACAAAAAATA
ATTTTGTTCCATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_2802 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g46390.1	204	3e-105	protein\|ras-related protein, putative, expressed
Brachypodium v1_2	Bradi1g12890.1	204	2e-105
Arabidopsis v10	AT5G45130.1	200	1e-94	\| Symbols: ATRAB5A, ATRABF2A, RABF2A, RAB5A, RHA1, ATRAB-F2A, RAB-F2A \| RAB homolog 1 \| chr5:18244495-18246060 FORWARD LENGTH=200