barSeed - Barley Seed Development Database

Probe CUST_26835_PI390587928

Source Contig U35_2804

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26835_PI390587928	Hv_44K_v2	TAATCGTCTTTGTATCCCTCTGTTTATGTCCTGACCTCTGCCGGAACTCTGTATGTGCAA	1204	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.496	1.495	1.041	0.895	0.481	0.542
Raw	10338.497	15974.800	9918.727	13254.143	2520.763	3115.273

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251055.1	1282	2e-24	1219 - 1278	100	60 / 60	plus	ABC07190
MLOC	MLOC_15500.2	547	2e-24	484 - 543	100	60 / 60	plus	ABC07190
MLOC	MLOC_15500.1	1709	2e-24	1255 - 1314	100	60 / 60	plus	ABC07190
JLOC1	JLOC1_10636.1	983	8e-25	541 - 600	100	60 / 60	plus
Harvest21	ABC07190	1332	3e-25	1216 - 1275	100	60 / 60	plus	ABC07190
Harvest35	U35_2804	1322	3e-25	1205 - 1264	100	60 / 60	plus

Contig Sequence (1322 bp)

>U35_2804 1322 Hv_44K_v2
AGGCCCAAATCCGCCGCCCGACCCAACAAAACCCTTGCGGCGGCGACCCACCCCATCTCC
GGCGGCCAGGCGGAATGGAGCGCTCTGCGGCGGGCGCCTCGTACCAGCGCTTCCCGCGCG
TGCGGATCCGCGAGCTCAAGGACGAGTACGCCAAGTTCGAGCTCAAGGACACCGACGCGA
GCATGGCCAACGCCCTCCGTCGCGTCATGATCGCCGAGGTCCCCACCGTCGCCATCGACC
TCGTCGAGATCGAGAGCAACTCCTCCGTCCTCAACGACGAGTTCCTCGCGCACCGCCTCG
GCCTCATCCCGCTCACCTCCTCCGGCGCCATGTCCATGCGCTTCTCCCGCGACTGCGACG
CCTGTGACGGGGACGGCTCCTGCGAGCACTGCTCCGTCGAGTTCCACCTCGCTGCCCGCG
CCACCGACTCCGGCCAGACGCTCGAGGTCACCTCCACCAAGGACCTCCGCTCCACCGACC
CCAAGGTCTGCCCTGTCGACCAGCAAAGGGAATACCAGCAGGCCCTCGGCAATGTCGACG
CCTACGAGCCCGATGCTGCCGGTGACCACAGAGGCATATTAATTGTAAAGCTGCGCCGTG
GGCAAGAGCTGCGTCTTCGAGCAATTGCCAGGAAGGGAATTGGAAAGGACCATGCCAAAT
GGTCTCCAGCTGCTACTGTGACCTTCATGTATGAGCCTGATATACGTATTAATCAAGAAC
TCATGGAGACACTCACACTTGAGGAAAAACAAAGCTGGGTGGAGAGCAGCCCTACAAAAG
TATTTGACATTGATCCTGTCACCCAACAGGTGACGATTGTGGACGCAGAGGCATACACAT
ATGACGATGAGGTGATCAAGAAAGCAGAGGCCATGGGGAAGCCAGGATTGGTAGAGATCA
ACGCCAAGGAGGACAGCTTTGTGTTCACTGTGGAAACAACAGGCGCCATCACAGCCTACG
AGCTGATTATGAATGCTATCACGGTCCTGAGGCAGAAGCTGGACGCCGTTCGCCTGCAAG
ATGATGACGGTGATCTTTTGGACCTCGGTGCCCACCTTACCGGAGGCTAACCGCTTTGTC
TGGGAAAGAAATGGGCAGCCGTATCTTTCTTTCTTCCGTGTCTAGGCCCGTCTCGTCTAA
CTAGCGTGTTTGTGGCAAGAGGTGATGGATGCTTCCTTTGATATCCAGTACCAAAACTCT
ACGGTAATCGTCTTTGTATCCCTCTGTTTATGTCCTGACCTCTGCCGGAACTCTGTATGT
GCAACCCCAAAAAAAAAGAAAAATGGGCACTGAAGTTTAGCCGCCAAAAAAAAAAAAAAA
AA

Homology of Contig U35_2804 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g02284.1	331	0.0	protein\|DNA-directed RNA polymerase subunit, putative, expressed
Brachypodium v1_2	Bradi4g08350.1	331	0.0
Arabidopsis v10	AT2G15430.1	319	1e-149	\| Symbols: RBP36A, RPB35.5A, NRPB3, NRPD3, NRPE3A \| DNA-directed RNA polymerase family protein \| chr2:6733661-6735482 FORWARD LENGTH=319