barSeed - Barley Seed Development Database

Probe CUST_26834_PI390587928

Source Contig U35_2805

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26834_PI390587928	Hv_44K_v2	CATGTTTTCTTCGTTGTTCTTTTGGATCACGACATAGCCAAATGTGGTGGAGTGTTCAAA	1550	GeneList: paleturquoise MasterList: Hydrolysis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	26.282	7.949	1.310	0.752	0.238	0.399
Raw	907.960	477.330	66.430	68.897	6.378	11.767

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_2805	1624	3e-25	1551 - 1610	100	60 / 60	plus

Contig Sequence (1624 bp)

>U35_2805 1624 Hv_44K_v2
GGTTTCAGAGAGCGCAACCTAGCAGACCAGCACGAGACCTCTCAGTCCCAGAAGGAATGA
GGCTTCATCATGGAGCACCAGTAGCTCTTTTTGTGCTCGTGCTCCTGTGCGTCCATGGAG
GCCGGGAAGCAGAGGCGGCGGGCGGCGGGTTCGTGAGGGCTCAGGGCACCCGCTTCGTGA
TCAACGGCAGCCCCTACTACGCCAACGGCTTCAACGCCTACTGGCTCATGACCATGGCCG
CCGACCCCGCGCAGAGGGGCAAGGTCACCTCCGCGCTCAGCCAGGCCGCCGCGCGCGGTC
TCTCCGTCGCCAGAACCTGGGCCTTCAGCGACGGCGGCAGCAACGCGCTGCAGTCCGCCC
CCGGCAGCTACAACGAGAACATCTTCAAGGGGTTGGATTTTGTGCTGTCTGAGGCTAGGA
AGAACGGGATTAAGGTGATACTGAGCCTTGTGAACAACTACGACACTTTTGGAGGGAAGA
AGCAGTATGTAGAGTGGGCAAGGGGGCGGGGGCAGGCCATCGGATCTGAGGATGACTTCT
TCACTAACTCTCTTGTCAAGGCCTTCTACAAGAACCATGTCAAGACCGTGCTGACGAGGG
TGAACACGGTGACCGGGGTGGCGTACAAGGACGACCCGACGATCCTGGCGTGGGAGCTGA
TGAACGAGCCCCGGTGCCAGTCCGACCTCTCCGGGCGGACCATCCAGTCTTGGATCACGG
AGATGGCGGCGCACGTCAAGTCCATCGACGGCAACCACATGCTGGAGGCCGGCCTGGAGG
GCTTCTACGGCGCGTCCTCGTCGTCGTCCCGTGCCGCCTCCGTGAACCCGGCCGGCCGCC
AGGTGGGCACCGACTTCATCGCCAACAACCGGGTCCCCGGCATCGACTTCGCCACCGTGC
ACTCGTACCCGGACCAGTGGCTGTCGAGCTCCGACGACCAGGCGCAGCGGAACTTCCTGG
GCAGGTGGCTGGACGCGCACATCGCGGACGCGCAGGGGACGCTGCGCAAGCCGCTGCTGA
TCGCCGAGTTCGGCAAGTCGCAGAGGGACCCCGGGTTCAGCAGCGCCCAGCGGGACGCGC
AGTTCGGCATGGTCTACGCCAAGATCTACCAGTCGGCGCGCAAGGGCGGCCCCACGGTGG
GCGGGCTCTTCTGGCAGCTCATGGCCGACGGCATGGACTCCTACGGGGACGGCTACCAGG
TCATCTTCGCGGAGGCGCCGGCGTCCACCACCGGCGTTATCACGTACGAGAGCCGCAAGC
TCAAGATGCTCGGCAAGGCGTTCGCGCGGGCTGAGCGCGCCAAGGGGGACGCGAGCGGGA
AGGTCACCGGTGGCAATTAGAGAAGGCCACAGACCACCACGACAACAAAGGATCTCTACT
TCTTTTATATAGTGAAGTGATGATGACGGAGTAAGAATGCGTGCCTTTTTTTTTTGTGTG
CATTACGTGTGTGAGTGAGTCAAGTTCTCCTCGAGATGATTCAAGATTATTCATCCGGGA
GAAAAGGAGTAATATTTGTTATCCTTCTTGTTACCTTCCTTGGAAGAGGACATGTTTTCT
TCGTTGTTCTTTTGGATCACGACATAGCCAAATGTGGTGGAGTGTTCAAAAAAAAAAAAA
AAAA

Homology of Contig U35_2805 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g47400.1	433	0.0	protein\|OsMan01 - Endo-Beta-Mannanase, expressed
Brachypodium v1_2	Bradi2g45790.1	418	0.0
Arabidopsis v10	AT5G66460.1	431	1e-179	\| Symbols: MAN7, AtMAN7 \| Glycosyl hydrolase superfamily protein \| chr5:26538911-26540837 REVERSE LENGTH=431