barSeed - Barley Seed Development Database

Probe CUST_26832_PI390587928

Source Contig U35_2807

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26832_PI390587928	Hv_44K_v2	TTTTCGTTTATGTGCATGACTAGGCAGGCCTGCTAAAGCTGAATGGTTACTCAAGTTTCT	813	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.166	0.075	0.502	1.715	2.083	3.025
Raw	1352.683	937.166	5782.923	30503.733	12955.370	20535.300

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55976.1	4267	2e-24	2401 - 2460	100	60 / 60	minus	ABC05623 ABC06682 ABC40598
MLOC	MLOC_55975.1	3741	2e-24	1798 - 1857	100	60 / 60	minus	ABC05623 ABC06682 ABC40598
Harvest21	ABC06682	876	3e-25	814 - 873	100	60 / 60	plus	ABC06682
Harvest35	U35_2807	876	3e-25	814 - 873	100	60 / 60	plus

Contig Sequence (876 bp)

>U35_2807 876 Hv_44K_v2
GCTGCACATTAGTTGGTGCATCCTCTCTCTGCATCTCCTCTTCTGGTTCCAGCTTCCTTC
AACACCTTCGTCCAGAAACTCTCGCAGACATGGCGCGCACCATCGGCCTGGCCATGGACT
ACTCGCCGTCCAGCAAGGCCGCGACGAGGTGGGTGGTCGAGAACCTGGTGAAGGCCGGCG
ACCGGATCATCCTCATCCACGTCCTCCCCAAGGGAGCAGACGCCAGCCACAAGGGGCTCT
GGAAGAGCACCGGTTCACCGCTGATCCCTCTGCTGGAGTTCATGGAGATGAACGTGCAGG
CGAGGTACGGGGTCAACCCCGACAAGGACGTGCTGGAGATCCTGCAAGCTGAGTCCAAGT
CCAAGCAGGTGGAAATACTGGCAAAAATATATTGGGGTGATGCAAGGGAGAAACTTTGTG
AGGCAGTAGATGATCTCAAGGTGGACTCTGTTGTGCTTGGCTGCAGGGGCTTAGGGCCGT
TGAAAAGGGCACTCCTTGGAAGCGTCAGCAATTATGTCGTCAACAATGCAACCTGCCCCG
TCACAGTGGTGCGCGGACCAAATGGATCACTTGCTTGAAGATGTCACTTATGGATTGATG
GGCTAGTTTGTGTGTTCATTGGTCCGTCAGCATAGGTGCAAATCGTGCTATTTAAGACTA
TAGTGATATTTTTCCTTTTTGGATTCCTGGCTATCCTTGTAGTGCAAATTCAGTGTGTTT
TCCTCAGTTATCTCTTTAGTTATACTATATTTCTGTTGTTTCTTACATGCTATTTGTAAA
AAACAAGTGCCTACAGACTTGTTCAGTGGTGCATTTTCGTTTATGTGCATGACTAGGCAG
GCCTGCTAAAGCTGAATGGTTACTCAAGTTTCTGAA

Homology of Contig U35_2807 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g53320.1	166	2e-98	protein\|universal stress protein domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g57530.1	167	4e-103
Arabidopsis v10	AT3G53990.1	160	2e-53	Adenine nucleotide alpha hydrolases-like superfamily protein \| chr3:19989658-19991019 REVERSE LENGTH=160