barSeed - Barley Seed Development Database

Probe CUST_26831_PI390587928

Source Contig U35_2808

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26831_PI390587928	Hv_44K_v2	TGATTTCAACCACGTCCATAGTATCTTTTGCTTGGTCCCCGCCACAAAGTTGTGTAAACC	744	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.189	1.741	0.972	0.902	0.443	0.565
Raw	282.185	349.226	173.372	251.888	44.005	60.703

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_25540.1	1063	8e-25	769 - 828	100	60 / 60	plus
Harvest21	ABC06927	792	3e-25	701 - 760	100	60 / 60	plus	ABC06927
Harvest35	U35_2808	836	3e-25	745 - 804	100	60 / 60	plus

Contig Sequence (836 bp)

>U35_2808 836 Hv_44K_v2
GGGGGTTCTCATTCTCCATCTACTCCACGTCTCACCAAACCTCCATCCCCATCTCTCATC
CCCTAGGTTCGCCTTCGCCGTCGGTCGGGCTCCCTCTCCGACACGCCGCCGTCGATACAT
CCACCCGAGGCATGGCGACGGCGTTCAAGGCGTTCGTGAACAGTCCCGTCGGCCCCAAGA
CCACCCACTTCTGGGGGCCCGTCGCTAACTGGGGCTTCGTCCTCGCGGGTTTGGTTGACT
TGAACAAGCCTCCTGAGATGATATCTGGCAATATGACAGCAGCCATGTGTGTCTATTCTG
GACTCTTTATGAGGTTTGCATGGATGGTACAGCCCCGGAACTACTTGCTTTTGGCGTGCC
ATGCCTCCAACGAAACCGTCCAGCTCTATCATTTATCTCGCTGTGCTAGGGCTCAGGGGT
ATCTGGATTCGAAGAAAGAGCCGGAGGCCAAAAAGTAAATGGTGTGGTGTTTCTGAAGTC
GGAGCCTGGAGCCATGATTCCGCAGCCAGCCTTTCAATAAGTAAAATTTGTTTCTGAAGC
TTTGCAATGCTATTCATGAGAAAAAAACCTACGAAGTGGAAATCTCTATTTCTATGATAC
TCATTCCTGTAATGCAGCGTTACAGCTTTCTTGTTCCTGAATCATGGTTCATGACATATT
TTTTCTTTTCAACAATGCACATAGCCGGGGTTCAAGTTATCCACCCCAGAAAAAAAAAAA
AAAATCGCTGCTTGATTGCACTGTTGATTTCAACCACGTCCATAGTATCTTTTGCTTGGT
CCCCGCCACAAAGTTGTGTAAACCACAGTGGCGTTCCTTGTTCTTTTGGATGATTG

Homology of Contig U35_2808 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g20660.1	108	4e-65	protein\|UPF0041 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g35732.1	108	2e-70
Arabidopsis v10	AT5G20090.1	110	5e-61	Uncharacterised protein family (UPF0041) \| chr5:6787246-6788000 REVERSE LENGTH=110