barSeed - Barley Seed Development Database

Probe CUST_26823_PI390587928

Source Contig U35_2816

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26823_PI390587928	Hv_44K_v2	TACCTTGTATGACATGCTACCTGATTCTTATTCATTTGCCAAGACCTTGCATAAGAATAC	1417	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.141	2.524	1.191	0.758	0.234	0.237
Raw	394.064	773.873	305.592	317.730	33.151	37.633

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75285.1	1840	7e-23	1739 - 1798	98	59 / 60	plus	ABC08549 ABC08550
JLOC1	JLOC1_50215.1	1691	4e-23	1552 - 1611	98	59 / 60	plus
Harvest21	ABC08550	490	3e-25	397 - 456	100	60 / 60	plus	ABC08550
Harvest21	ABC08549	1482	1e-23	1390 - 1449	98	59 / 60	plus	ABC08549
Harvest35	U35_2816	1520	3e-25	1418 - 1477	100	60 / 60	plus

Contig Sequence (1520 bp)

>U35_2816 1520 Hv_44K_v2
AATCCCATCTTTCTCTCTCCCCCTCCCGCAGCAGCACATGCGCGTCGCCCGCCGACACCC
ACACCCACACCCAGAGCATCCACAGCAGCAGCAGCAATGGAGCGTCGGGGCTTGCTTGTC
GTCCTCGTCGCCGCGCTGTGCCTCTCGGGCGGCGCCGACGCCAGGCACGCCAAGAAGTCG
TACCAGGCCGTCTTCAGCTTCGGGGACTCGCTCTCCGACGCCGGCAACCTCATCGTTGAC
GGCATCCCCAAGTCGCTCACCACCGCGCGGGCTCCCTACGGCATGACCTTCTTCGGCCGC
CCCACCGGCCGCTGCTCCAACGGCCGCGTCGTCGTCGACTTCCTCGCCGAGCATTTCGGC
CTGCCGCTGCCGCCGGCGTCGCAGGCGCATGGCATGGACTTCAAGAAAGGGGCCAACTTC
GCCATCACCGGCGCCACGGCGCTGGAGTACTCCTTCTTCAAGGCCCATGGCATCGACCAG
CGTATCTGGAACACCGGCTCCATCAACACCCAGATCGGCTGGCTCCAGAAGATGAAGCCG
TCGCTCTGCAAATCGGAGAAAGAGTGCAAGGACTACTTCAGCAAGTCCCTGTTTGTGGTG
GGAGAGTTTGGGGGGAACGACTACAATGCTCCTCTGTTCTCCGGCGTCGCCTTCTCCGAC
GTGAAGACCTACGTGCCGCTGGTCGCCAAGGCCATCGCCAACGGCGTCGAGAAATTGATC
GAGCTTGGCGCGACCGACCTGTTGGTGCCTGGAATTCTTCCGATCGGGTGCTTCCCATTG
TACCTGACTCTCTACAACAGCAGCAAGAAGTCTGACTACAACGCGCGCACCGGGTGCCTC
CGAAGATACAACCGTCTGGCCTTCCATCACAACAGAGAGCTCAAGCAGCAGCTTGACCAG
CTTCAGAAGAAGTACCCAAAGACCAAAATCATGTATGGCGATTACTTCAAAGCTGCAATG
CAGTTTGTCGTCAGCCCTGGAAAATTCGGTTTCAGCACGGCATTGCAAGCGTGCTGCGGC
GCCGGAGGGTCGGGCGCCTACAACTTCAACCTGAAGAAGAAGTGCGGCGAGGCAGGCGCG
AGCGTGTGCTCGAACCCGTCGGCGTACGTGAGCTGGGACGGCATCCACATGACCGAGGCC
GCCTACCGCATGGTCGCCAACGGCTGGCTGAATGGCCCCTACGCTTCTCCACCGATCATG
AAGTGAGAATCGAGATGGCTAGCCAACGTTGTTGTTCTTGTTGGTGGTGGTGGTGCTGCT
GCTGATGGAGGGGGATGGACATGCAGAGCGCTTCAGGCACTGAAGTATTAAGTTATGATG
AGTAAAAATGATTAGTCTGTTCGTTGAGAGGCTGTATAAACCGTGCCGGTATAGATATGT
TTTCCCAGCTGAAAAGCTCTAGTAGTACAGATGTACGTACCTTGTATGACATGCTACCTG
ATTCTTATTCATTTGCCAAGACCTTGCATAAGAATACATTAAATATTATGGAGACAAAAA
AAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_2816 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g34120.1	396	0.0	protein\|GDSL-like lipase/acylhydrolase, putative, expressed
Brachypodium v1_2	Bradi1g38780.1	353	0.0
Arabidopsis v10	AT5G45910.1	372	1e-106	GDSL-like Lipase/Acylhydrolase superfamily protein \| chr5:18620420-18622264 REVERSE LENGTH=372