barSeed - Barley Seed Development Database

Probe CUST_26820_PI390587928

Source Contig U35_2819

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26820_PI390587928	Hv_44K_v2	GTGCCGTGCCCCGTGGCTGTTTTAAGAATCTCAATATATATGGTGGTTGAAAAGAAAAAA	812	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.491	1.663	1.038	0.874	0.556	0.514
Raw	30885.967	31186.667	17581.267	22627.073	5176.050	5268.553

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249961.1	977	2e-24	907 - 966	100	60 / 60	plus	ABC06793
MLOC	MLOC_68913.1	722	7e-23	598 - 658	98	60 / 61	plus	ABC06793
JLOC1	JLOC1_45641.1	763	4e-23	598 - 658	98	60 / 61	plus
Harvest21	ABC06793	1375	1e-23	813 - 873	98	60 / 61	plus	ABC06793
Harvest35	U35_2819	880	3e-25	813 - 872	100	60 / 60	plus

Contig Sequence (880 bp)

>U35_2819 880 Hv_44K_v2
GCAGGCAATTTTTGTCACGAGGCCCACCCACGCACCAGCACCAAGCCCACGCAGCGCCCG
CCTCCTCCCAGTCCCACCCCACCACACCCCTCGCTCCGATCCCAAGGTTGGCGGCCGGCG
GCAGGATGAAGGCCAAGGCGGGATCCCGCGCCGGCGGCTCCAGGCTCGCGGTGAAGAAGA
GCAAGGCCGACAAGGACCCCAACAAGCCCAAGCGACCCCCGAGCGCCTTCTTCGTCTTCA
TGGATACCTTCAGGAAGGAGTACAGGGAGAAGCACCCCGACGTCAAGCTGGCCTCCGTGA
TTGGCAAGGCCGGTGGTGAGAAGTGGAAGTCTCTGAGTGACGCTGAGAAGGCTCCCTACA
ATGCCAAGGCCGAGAAGCTCAAGGCCGAGTACACCAAGAAGATCAACGCCTACAACAACC
CACAGGCAGGAGAGGCGTCCGGCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGG
ACGACGGCAGCGAGGGCGACGCGTGAAGCGGCAGCAGGGGGAGGGTGGTCTCTGGAACGT
CGCCGTTTGATGCTTCTCTGTTTGCCAGTGTCACCGATCGATGATGGATGTTTGCTGTTA
GTTTAGCTCCTTGGTAGTCCCTCCCTCTCTTTCAGGCTCTCCTGCTGCTGCTGGTGGTAG
TAATGGTGGCTCTAGTCCCATGTAGGCATTGTCCTGGATCCGAGTGGCGAAGTTGCTATA
GCCTAGTCGTCTTTCTGTAGGGTCCTGTGCTCGGACCGCCATCTTCTGTTGCTTCGTTTT
TATGCTAGTTCAGTCTCTGTCGAATGTACCTAGTGCCGTGCCCCGTGGCTGTTTTAAGAA
TCTCAATATATATGGTGGTTGAAAAGAAAAAAAAAAAAAA

Homology of Contig U35_2819 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g37910.1	140	1e-55	protein\|HMG1/2, putative, expressed
Brachypodium v1_2	Bradi4g37247.1	129	1e-57
Arabidopsis v10	None