barSeed - Barley Seed Development Database

Probe CUST_26810_PI390587928

Source Contig U35_44953

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26810_PI390587928	Hv_44K_v2	TGCGTCGTACTATGTGCGTGTCTATGTAATGTGCGTGCTTTATCTATAAATTATCCCTCG	23	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.939	0.815	0.419	1.164	1.152	1.751
Raw	3271.167	4868.790	2131.947	10242.590	3181.670	5338.340

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356588	2841	2e-24	2780 - 2839	100	60 / 60	plus	ABC01689 ABC43248
MLOC	MLOC_70736.2	776	2e-24	626 - 685	100	60 / 60	plus	ABC01689 ABC43248
JLOC1	JLOC1_46957.1	1062	8e-25	855 - 914	100	60 / 60	plus
Harvest21	ABC43248	437	3e-25	24 - 83	100	60 / 60	minus	ABC43248
Harvest21	ABC29695	493	3e-25	422 - 481	100	60 / 60	plus
Harvest21	ABC01689	791	3e-25	685 - 744	100	60 / 60	plus	ABC01689
Harvest21	ABC01688	703	6e-22	648 - 703	98	55 / 56	plus
Harvest35	U35_44953	437	3e-25	24 - 83	100	60 / 60	minus
Harvest35	U35_30039	493	3e-25	422 - 481	100	60 / 60	plus
Harvest35	U35_14498	816	3e-25	685 - 744	100	60 / 60	plus

Contig Sequence (437 bp)

>U35_44953 437 Hv_44K_v2
TTTTTTTTTTTTTTTTTATTTAACGAGGGATAATTTATAGATAAAGCACGCACATTACAT
AGACACGCACATAGTACGACGCACACAAATATCAATTCACCACTCTGCTCTGCTCGCGGA
GCCGACAACACCAAGGACTGCATACACACAGATCCATCGACCCTAAAACCACACACGACG
ACTAGCTAGAACGACACGGATCTGGCCGCCGAGGCCTAGCTAAGCTTCAATACTAGTAGC
AGCAATTTATTCTCCGGACATGGAACTCCTTTTTTCATGGTTTTAACAGCTTTCGCCAAT
GCAGGGCAGAGGTGTCCATCTTTAACAGTAAATTCAACCCCCTCAGACTTGGACACAACA
GTACCATCCTCGAGCCGGGCCTCATATTTGACAAAGACTTCATCAAGATCCTTTGGGGTC
TCCCATTTATCTCCCTC

Homology of Contig U35_44953 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None