barSeed - Barley Seed Development Database

Probe CUST_26802_PI390587928

Source Contig U35_18691

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26802_PI390587928	Hv_44K_v2	ATAATGTTGTGTCTGTTTGGGAACTAGAACATGCAGTAATATATGCACAGTTTGGCCAAA	994	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6972.2	4933	2e-23	2410 - 2467	100	58 / 58	plus	ABC09447 ABC45584
MLOC	MLOC_6972.1	5328	2e-23	2789 - 2846	100	58 / 58	plus	ABC09447 ABC45584
MLOC	MLOC_6971.2	5487	2e-23	2800 - 2857	100	58 / 58	plus	ABC09447 ABC45584
JLOC1	JLOC1_4590.3	6064	1e-23	2813 - 2870	100	58 / 58	minus
JLOC1	JLOC1_4590.2	5710	1e-23	2459 - 2516	100	58 / 58	minus
JLOC1	JLOC1_4590.1	5719	1e-23	2468 - 2525	100	58 / 58	minus
JLOC1	JLOC1_4589.1	5490	1e-23	2830 - 2887	100	58 / 58	plus
Harvest21	ABC09447	1651	4e-24	995 - 1052	100	58 / 58	plus	ABC09447
Harvest35	U35_18691	1120	3e-25	995 - 1054	100	60 / 60	plus

Contig Sequence (1120 bp)

>U35_18691 1120 Hv_44K_v2
AACAAACCACACCATTTGAGAATAACTGGTGTGGATGATCATGAGACAGTACAGAGGACT
GTTGGAGGTCTGAAGGTCATTGGGCAACGCCTGGAGCAGCTTGCAGAAGACTGTGGAATA
TCTTTTGAGTTCAGGGCAGTGGGTGCTGACATCGGGGATGTTACACCTGCAATGCTAGAT
TGCCGTCCCGGGGAAGCACTAGTTGTGAATTTTGCATTCCAGCTGCACCACCTTCCTGAT
GAAAGTGTTTCGATCATGAACGAACGGGACCAGCTCCTTCGTATGGTGAAGGGCCTTCAA
CCAAAGCTTGTGACCCTGGTTGAGCAGGATGCCAATACTAATACTGCTCCATTTCAAACA
AGGTTCCGTGAGGTCTATGACTACTACTCCGCCCTTTTCGATTCACTGGACGCAACACTT
CCAAGGGAAAGCCCAGATAGAATGAATGTGGAAAGACAATGCCTTGCACGAGAAATTGTG
AACATCTTGGCTTGTGAAGGCCCTGATCGCGTGGAGAGGTATGAAGTTGCTGGGAAATGG
AGGGCGAGAATGACGATGGCTGGATTCGCGCCATGCCCATTTAGCAGCAACGTCATCGGA
GGAATAAGATCGCTATTGAGCTCGTACTGCGACAGGTACAAGTTTGAGGAGGACCATGGG
GGACTTCACTTCGGCTGGGGAGAGAAAACGCTCATCGTCGCCTCTGCGTGGCAATAGATC
GAGCTCGCTGACTTGGGTTGCATTAGCACTGCTGTATTTTAGGAGCTTCTGGTGCAGAGA
TTGTAAAAAGGGTGTGAACCGCAGAGGAGTTCTTGGCTGATCTATCTAATTTTAGGAGTC
TGCTTGTCAGAATAATTGAGTTTGGCTGATCGCCCGGGTGAACCATGTTGTTCTGCTGTA
GCAACTGGTCACACGAATGTGTTGTTGTATTCTGGGATAGAATCATGACATGTCGACTCT
GCTCCATGTATAAATCTATTTATGTTGCTAGAACATAATGTTGTGTCTGTTTGGGAACTA
GAACATGCAGTAATATATGCACAGTTTGGCCAAAAAAAAAAAAAAAAATGTCTATCGAAA
CAATCATGTATATACTTGCAAAAGGTCCAAAAAAAAAAAA

Homology of Contig U35_18691 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g65900.1	554	4e-161	protein\|chitin-inducible gibberellin-responsive protein, putative, expressed
Brachypodium v1_2	Bradi2g56910.1	572	1e-162
Arabidopsis v10	AT1G21450.1	593	6e-105	\| Symbols: SCL1 \| SCARECROW-like 1 \| chr1:7509721-7511502 FORWARD LENGTH=593