- Probe CUST_26796_PI390587928
- Source Contig U35_32989
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_26796_PI390587928 | Hv_44K_v2 | ATGAGAAAGGTTTAGAGAGGATTTGTAGGTCAAGGTTAGGTGCGAAGCTGATGCCTGTTC | 240 | GeneList: mediumpurple3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 3.659 | 2.999 | 1.415 | 0.557 | 0.136 | 0.111 |
| Raw | 852.336 | 1082.835 | 440.914 | 276.776 | 23.585 | 21.363 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest35 | U35_32989 | 339 | 3e-25 | 241 - 300 | 100 | 60 / 60 | plus |
Contig Sequence (339 bp)
>U35_32989 339 Hv_44K_v2 GGGCGAATTGGGCCCTCCAGAAGATGCTCGAGCGGCCGCTGCATCACTACTACCTGCACC ATGGACAGCCATCCATAGATCCAGCAAAGCATCTCAAGCGGTATCACCTCAGCCACCATT TCAGAATTCAGGACAAGGGCTTCGGCATCACCTCTTCGCTCTGGGACGCCGTTTTCGGGA CGTTGCCTTCGTCCAAGATCGTCACGAAGCTCAGTTGACACACGTAAACGTGTTCTTTGC ATGAGAAAGGTTTAGAGAGGATTTGTAGGTCAAGGTTAGGTGCGAAGCTGATGCCTGTTC CGGTGTGAAGATGTTCGATTGGCCTTAAAATTCCATCCC
Homology of Contig U35_32989 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |