barSeed - Barley Seed Development Database

Probe CUST_2678_PI390587928

Source Contig U35_40500

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2678_PI390587928	Hv_44K_v2	ATATATAGGCCAGTGTCATGTATTGCCAGAATGTTGCCAGAATGTATAGGGGTCATATTT	59	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61844.2	690	6e-24	551 - 609	100	59 / 59	plus	ABC09368 ABC09369
MLOC	MLOC_61844.1	2120	6e-24	1644 - 1702	100	59 / 59	plus	ABC09368 ABC09369
JLOC1	JLOC1_40438.2	2285	3e-24	1398 - 1456	100	59 / 59	plus
JLOC1	JLOC1_40438.1	2518	3e-24	1631 - 1689	100	59 / 59	plus
Harvest21	ABC09368	1694	1e-24	1535 - 1593	100	59 / 59	plus	ABC09368
Harvest21	ABC09369	713	4e-24	1 - 58	100	58 / 58	minus	ABC09369
Harvest35	U35_40500	394	3e-25	60 - 119	100	60 / 60	minus
Harvest35	U35_3609	1694	1e-24	1535 - 1593	100	59 / 59	plus

Contig Sequence (394 bp)

>U35_40500 394 Hv_44K_v2
TTTTTTTTTTTTTTTTTGAGGGGAAAAAAAACCCGGCTTAATAACAACGTCTTACAAAAA
AATATGACCCCTATACATTCTGGCAACATTCTGGCAATACATGACACTGGCCTATATATG
CAACAACCCAAACTCGTTGATCTTGCATGAACAACCCCCTGAAAAAAATGTATATGTATA
TAGATGTAAAGAAAAATATACCCCCCAGCACCCCAAAAAAGGGGCCCCTGCAACCAAACT
ACAAAATGAGCCGGAAAAGGGACAGCTACTACTTACTGCAACTTAAAAATGGCTAATGTC
CCGAGAAACACTTATTTTTCACCATCATCATCTATTCCTCCGGAAAGACCATATCTTGAC
AGCCCCCTCTATCTGTTGCCCTTTCTTTTGCAAA

Homology of Contig U35_40500 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None