- Probe CUST_26785_PI390587928
- Source Contig U35_44968
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_26785_PI390587928 | Hv_44K_v2 | GCTCAGCCTCTCTTTCAGATAATGGAGTTGTTGTGAAATCTTTAGCCATCTTATCTGTAA | 447 | GeneList: lightsteelblue1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 8.447 | 5.368 | 1.353 | 0.626 | 0.256 | 0.361 |
| Raw | 222.740 | 235.259 | 50.775 | 40.328 | 2.840 | 7.516 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_72281.1 | 1558 | 2e-24 | 1323 - 1382 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_48071.1 | 1890 | 8e-25 | 1403 - 1462 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC43282 | 538 | 3e-25 | 448 - 507 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_44968 | 538 | 3e-25 | 448 - 507 | 100 | 60 / 60 | plus |
Contig Sequence (538 bp)
>U35_44968 538 Hv_44K_v2 GAATATGATATGCTGCTTGGCAATGCTACTATTCACCTTCCGGCGACAAAGAAAAGGCAG ACGCGCAGCGGTGTGAAGTACTACGACTCTACACATGAAAGGGTACCATCATATTTTGAT TGTCACCCAGATCTTGCGAAACAAGTACGTGTAGAAAGTAGCAGCAAACCCAATCAGTTA GCTCTGTTGCGTGGATTTTTCTTCTGGATGGAGAATATTACGAATGACGGCCAATTCAGG CCATGGAGTGATGATTTCAAACTTTACAAGATTGTTCCTCCCACGGAATGAGATTACCTA CAGAAGAGTTCTCCATTCTCAATTAGAGAAACTGAGGTTCTCCCGTGGTGTGATTTGTCA GCACAACTCGTAGAAGTCTAGTAGCCTGTCTTGGTACTAACGACCCCCAAATGAATTTTC TTTAGACAAGAGTATATACCCTTGTTTGCTCAGCCTCTCTTTCAGATAATGGAGTTGTTG TGAAATCTTTAGCCATCTTATCTGTAATTTAAGTGCACACTAGTATAATTTAGCTGAC
Homology of Contig U35_44968 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |