barSeed - Barley Seed Development Database

Probe CUST_26774_PI390587928

Source Contig U35_44977

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26774_PI390587928	Hv_44K_v2	TCCCTGGACAAGCAATGCGAGGTGGTGTGCGGCAACTTCATGGCCATGCCGTTCCCAGAC	377	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75615.1	1680	2e-23	703 - 760	100	58 / 58	plus	ABC06698 ABC43360
JLOC1	JLOC1_50443.1	1510	1e-23	635 - 692	100	58 / 58	plus
Harvest21	ABC43297	578	3e-25	378 - 437	100	60 / 60	plus
Harvest21	ABC06697	1437	4e-24	596 - 653	100	58 / 58	plus
Harvest35	U35_44977	578	3e-25	378 - 437	100	60 / 60	plus
Harvest35	U35_1836	1486	4e-24	597 - 654	100	58 / 58	plus

Contig Sequence (578 bp)

>U35_44977 578 Hv_44K_v2
CTCCCCGCATCTGGAGCCGCTTTCTCCTCGCGAGTCAAACCTTTCTCTCCTCCTCCCTCC
CCTAGATCGGGGAGATGGAGCCGGCCACCATGGCCTGGACGCTGGCGGCGGCGGGTTTCG
CGCTGGTGTACTGGTTCGTCTGGGTGATGGGCGCCGCGGAGGTGCAGGGGAAGCGCGCCG
TCGACCTCCAGATGGGATCCATCGCCGACGACAAGGTCGGGGACAGGTATTCCCAGTACT
GGTCCTTCTTCCGCAGCCCCAAGGAGACGGCCGCCGCGGCCACCGCCGACAAGGTTCCGG
CCTTCGTCGACACCTTCTACAACCTCGTCACTGACATCTACGAGTGGGGCTGGGGCCAGT
CGTTCCACTTCTCGCCCTCCCTGGACAAGCAATGCGAGGTGGTGTGCGGCAACTTCATGG
CCATGCCGTTCCCAGACGCGTCCTTCGACGGCGCCTACTCCATCGAGGCCACCTGCCACG
CGCCCAGGCTGCAGGACGTCTACGGCGAGGTCTTCCGCGTGCTCAAGCCAGGGGGGCTCT
ACGTCTCATACGAGTGGGTCACCACCCCGCTGTACCGC

Homology of Contig U35_44977 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g04340.1	364	9e-52	protein\|C-methyltransferase, putative, expressed
Brachypodium v1_2	Bradi3g32420.1	372	1e-63
Arabidopsis v10	None