- Probe CUST_26769_PI390587928
- Source Contig U35_44983
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_26769_PI390587928 | Hv_44K_v2 | AAACTGCTTGTACCTGTCATGTTGTAAACGTTATTCAAATGTATGTATACCCTGATGTCA | 16 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.150 | 1.378 | 1.458 | 0.951 | 0.242 | 0.250 |
| Raw | 95.689 | 178.386 | 164.977 | 176.953 | 14.752 | 16.923 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_20395.5 | 5947 | 3e-22 | 8 - 66 | 98 | 58 / 59 | minus | ABC43305 |
| MLOC | MLOC_20395.6 | 5752 | 3e-22 | 8 - 66 | 98 | 58 / 59 | minus | ABC43305 |
| MLOC | MLOC_20395.2 | 3826 | 3e-22 | 8 - 66 | 98 | 58 / 59 | minus | ABC43305 |
| MLOC | MLOC_20395.1 | 3794 | 3e-22 | 8 - 66 | 98 | 58 / 59 | minus | ABC43305 |
| MLOC | MLOC_20395.3 | 5656 | 3e-22 | 8 - 66 | 98 | 58 / 59 | minus | ABC43305 |
| MLOC | MLOC_20395.4 | 3523 | 3e-22 | 8 - 66 | 98 | 58 / 59 | minus | ABC43305 |
| JLOC1 | JLOC1_14127.15 | 4831 | 1e-22 | 4765 - 4823 | 98 | 58 / 59 | plus | |
| JLOC1 | JLOC1_14127.14 | 5491 | 1e-22 | 5425 - 5483 | 98 | 58 / 59 | plus | |
| JLOC1 | JLOC1_14127.13 | 4562 | 1e-22 | 4496 - 4554 | 98 | 58 / 59 | plus | |
| JLOC1 | JLOC1_14127.12 | 4684 | 1e-22 | 4618 - 4676 | 98 | 58 / 59 | plus | |
| JLOC1 | JLOC1_14127.11 | 4530 | 1e-22 | 4464 - 4522 | 98 | 58 / 59 | plus | |
| JLOC1 | JLOC1_14127.10 | 3508 | 1e-22 | 3442 - 3500 | 98 | 58 / 59 | plus | |
| JLOC1 | JLOC1_14127.9 | 3642 | 1e-22 | 3576 - 3634 | 98 | 58 / 59 | plus | |
| JLOC1 | JLOC1_14127.8 | 2449 | 1e-22 | 2383 - 2441 | 98 | 58 / 59 | plus | |
| JLOC1 | JLOC1_14127.7 | 3462 | 1e-22 | 3396 - 3454 | 98 | 58 / 59 | plus | |
| JLOC1 | JLOC1_14127.6 | 3490 | 1e-22 | 3424 - 3482 | 98 | 58 / 59 | plus | |
| JLOC1 | JLOC1_14127.5 | 3431 | 1e-22 | 3365 - 3423 | 98 | 58 / 59 | plus | |
| JLOC1 | JLOC1_14127.4 | 2549 | 1e-22 | 2483 - 2541 | 98 | 58 / 59 | plus | |
| JLOC1 | JLOC1_14127.3 | 2276 | 1e-22 | 2210 - 2268 | 98 | 58 / 59 | plus | |
| JLOC1 | JLOC1_14127.2 | 2321 | 1e-22 | 2255 - 2313 | 98 | 58 / 59 | plus | |
| JLOC1 | JLOC1_14127.1 | 2528 | 1e-22 | 2462 - 2520 | 98 | 58 / 59 | plus | |
| Harvest21 | ABC43305 | 553 | 3e-25 | 17 - 76 | 100 | 60 / 60 | minus | ABC43305 |
| Harvest35 | U35_44983 | 553 | 3e-25 | 17 - 76 | 100 | 60 / 60 | minus |
Contig Sequence (553 bp)
>U35_44983 553 Hv_44K_v2 TTTTTTTTTTTTTTTTTGACATCAGGGTATACATACATTTGAATAACGTTTACAACATGA CAGGTACAAGCAGTTTCTTCTGAAGAAGTAAGTCTCAATACTACGACATCTTAGGGATTA TTCCTATCCAGTCTTATGTAAGCTAAATTCATATCTACATCTTGCCAGAATACAGACTAC AGAGTACAAGCATGATTGTGCCGTACTAGAACAGGCTTCACTGCATATGGTTGTTCATCC ACATCCATGCCCATCATCCATTTCATAAGCTCTGGATAATCTGTTTCAGCGAGCTGGAGG TGCCCACGACCACGAGCCCTACACCGACCACTATGATGCCCACGCAGACCACCTGCTCGA ACCCCACCTTCCTGCAGGTCCTGGACCTGATCTTCAGGTAGCAGATGCACGGCAGCAGCA TCGTGGCGGTGCCGCTCAGGAACGACCCGGTGAGCGCGACGGCATAGGCAAAGTACGGCA CGAGGAGCGCCACGATGGTCGTGCTGACGACCAGCGAGGTCCTGACGGAGACGCTAACGG CCTTGTTCTTGCC
Homology of Contig U35_44983 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |