barSeed - Barley Seed Development Database

Probe CUST_2675_PI390587928

Source Contig U35_15093

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2675_PI390587928	Hv_44K_v2	CTCTTTGAATTGAATGAGGCCTTTGCCTCTCAATTTGTCTACTGCTGCAACAAGCTGGGA	1206	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37671.2	1720	2e-24	1150 - 1209	100	60 / 60	plus	ABC02749 ABC02750 ABC43832 ABC49702
MLOC	MLOC_37671.1	1407	2e-24	1164 - 1223	100	60 / 60	plus	ABC02749 ABC02750
JLOC1	JLOC1_24412.1	1987	8e-25	1073 - 1132	100	60 / 60	plus
Harvest21	ABC02751	606	3e-25	33 - 92	100	60 / 60	plus
Harvest21	ABC02750	1767	3e-25	1188 - 1247	100	60 / 60	plus	ABC02750
Harvest35	U35_15093	1820	3e-25	1207 - 1266	100	60 / 60	plus

Contig Sequence (1820 bp)

>U35_15093 1820 Hv_44K_v2
CACGCGTCCGGCCGCTTCCCTTTTCGATAAGAAGCAACCAACCAACGATCTCCCTTCCAT
CGCTGCCCAGCAAGAACACGCCTCCCTCCTCCGACCCCGAGCTCCTCAGAGTCAGCGCAA
GGGGATCTCCCTCTCCCTGCTTCCTCCATGGAGAAGGCGATCGACCGGCAGCGCGTGCTC
CTCGCGCACCTCCTCCCCTCCCCCGCCTCCGCCGGCAGCCAGCTTTCCGCGTCGGCGTGC
GCGGCCGGGGACAGCGCCGCCTACCAGAGGACCTCCTGCTTCGGGGACGACGTCGTCATC
GTCGCTGCCTACCGGACACCGATATGCAAGGCCAAGCGAGGAGGCTTCAAGGACACGTAC
CCGGAGGACCTTCTTACCCCTGTCCTCAAGGCTGTTCTGGACAAAACTGGAATCAACCCA
GCTGAGATCGGCGACGTTGTAGTCGGGACGGTGCTAGGCCCGGGTTCTCAGCGTGCCATT
GAGTGCAGGACGGCATCTCTGTTGGCTGGAATTCCTGAGACCGTTCCTGTGAGAACTGTG
AACCGACAATGCTCATCTGGGCTACAAGCAGTAGCTGATGTTGCCGCTGCTATAAAAGCT
GGTTTCTATGACATAGGGATTGGTGCAGGTCTCGAGTCCATGTCGGTAAACTCTGTTGGT
TGGGAAGGCCAAGTAAACCCAAGAGTCATTGAACTACAGAAAGCACAGGATTGTCTTCTA
CCCATGGGAATAACATCTGAAAATGTTGCTGAGCGATACGGTGTAACCAGACAAGAGCAA
GATAAGGCTGCTGCTGAGTCTCATGCGAGAGCTGCTGCAGCCACGGCTTCTGGAAAGTTC
AAGGATGAGATTATTCCGGTGCATACTAAGATCATTGACCCCAAAACTGGAGAGGAGAAG
AAAGTTGTGATATCAGTTGATGATGGGATTAGGCCTGGGACCACGCCATCTGGATTGGCC
AAGCTTAAAACAGTTTTTAAGAAGGATGGGACTACGACTGCAGGAAATTCTAGCCAAGTG
AGTGATGGTGCTGGAGCTGTTCTTCTCATGAAGAGATCTGTTGCGGTGAGCAAGGGGCTT
CCTATACTCGGCGTTTTCAGGAGTTTCGTTGCTGTTGGAGTGGATCCAGCTGTTATGGGC
ATCGGTCCTGCGGTCGCCATACCTGCTGCAGTGAAGTCTGCTGGCCTTGAGATTGACGAC
ATCGATCTCTTTGAATTGAATGAGGCCTTTGCCTCTCAATTTGTCTACTGCTGCAACAAG
CTGGGACTCGACAGGTCAAAGGTGAACGTGAATGGAGGTGCCATCGCTATGGGGCACCCT
CTTGGTGCAACAGGCGCACGGTGCATCTCGACCCTTCTGAACGAAATGAAGCGCCGGGGC
AGGGACTGCAGATTCGGGGTCGTGACCATGTGCATCGGATCCGGCATGGGCGCGGCGGCC
GTCTTCGAGCGGGGCGACTCGGTGGACGAGCTCTCCAACGTGCGCCACATCCAGTCGCAC
AACTTCCTGTCCAAGGATGCTGCGAAGTAGAGGCGTGGAACGAAATCGACCATCCTCAGG
TATAGATCATCACAAGCAGCAGCAGCAGCAGCAGCAAAGACAGACCCACAGCAGAAGAAT
AATTTTTACAGGCAAGAAGTTTGAAGTAATGTAATTTCGTGGGGGATAAAAAAGGATGTA
TTATTAGTGACATAAGGCTTTCGTGTACGTTTGTTCTGAATAAAATATGTTTTTTTCTTC
TGAAGTAAAAAAAAAAAAATTGAAGGTGGAAAAAAAAAAAAAAAAATGCTCTGTTTTCTG
TGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_15093 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g57260.1	449	protein\|3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed
Brachypodium v1_2	Bradi3g55420.1	462
Arabidopsis v10	AT2G33150.1	462	\| Symbols: PKT3, PED1, KAT2 \| peroxisomal 3-ketoacyl-CoA thiolase 3 \| chr2:14047814-14050983 REVERSE LENGTH=462