barSeed - Barley Seed Development Database

Probe CUST_26758_PI390587928

Source Contig U35_44995

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26758_PI390587928	Hv_44K_v2	AAGTGTTTGTTTGGTGTCTAATGATGCATGAATGTCCTGATGATGGTGGTGCAGGTTGAG	202	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75025.1	1849	2e-24	1789 - 1848	100	60 / 60	plus	ABC02915 ABC02916
Harvest21	ABC43325	469	3e-25	203 - 262	100	60 / 60	plus
Harvest35	U35_44995	469	3e-25	203 - 262	100	60 / 60	plus

Contig Sequence (469 bp)

>U35_44995 469 Hv_44K_v2
GTGCCCCTTTGTCGTTGAACAATGTGTCACGACTGTTCCATCGCGCGAGCGGCACATGCA
AAAAGATCAACGACCTGTGATCAACCAAGCGTGCCGTGTCGTGTCACTCACGTCCGTGCC
GTCGTACGTCCTTGCCCGGCTTGGTGCCTCTGTGCCATGAGCTCACGACATCCATGGGCG
AATCGAATCTTGTGGTTCTACCAAGTGTTTGTTTGGTGTCTAATGATGCATGAATGTCCT
GATGATGGTGGTGCAGGTTGAGGGGCTGATGAAGCTGATGGAGGGGGAGCACGTGGGGCC
GTTCAACCTGGGGAACCCGGGGGAGTTCACGATGCTGGAGCTGGCCAAGGTGGTGCAGGA
CACCATCGACCCCAACGCAAGGATCGAGTTCCGGGCCAACACCGCCGACGACCCGCACAA
GCGCAAGCCGGACATCACCAAGGCCAAGGAGCTGCTCGGGTGGGAGCCC

Homology of Contig U35_44995 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None