barSeed - Barley Seed Development Database

Probe CUST_2673_PI390587928

Source Contig U35_15095

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2673_PI390587928	Hv_44K_v2	GGGGATAAAAAAGGATGTATTATTAGTGACATAAGGCTTTCGTGTACGTTTGTTCTGAAT	498	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37671.2	1720	2e-24	1605 - 1664	100	60 / 60	plus	ABC02749 ABC02750 ABC43832 ABC49702
JLOC1	JLOC1_24412.1	1987	8e-25	1528 - 1587	100	60 / 60	plus
Harvest21	ABC43832	208	3e-25	45 - 104	100	60 / 60	minus	ABC43832
Harvest21	ABC02751	606	3e-25	482 - 541	100	60 / 60	plus
Harvest21	ABC02750	1767	3e-25	1643 - 1702	100	60 / 60	plus	ABC02750
Harvest21	ABC02749	743	3e-25	599 - 658	100	60 / 60	plus	ABC02749
Harvest35	U35_15095	605	3e-25	499 - 558	100	60 / 60	plus
Harvest35	U35_15093	1820	3e-25	1662 - 1721	100	60 / 60	plus

Contig Sequence (605 bp)

>U35_15095 605 Hv_44K_v2
GGACTCGACAGGTCAAAGGTGAACGTGAATGGAGGTGCCATCGCTATGGGGCACCCTCTT
GGTGCAACAGGCGCACGGTGCATCTCGACCCTTCTGAACGAAATGAAGCGCCGGGGCAGG
GACTGCAGATTCGGGGTCGTGACCATGTGCATCGGTTTGTTTTCCCCCCTCTGAACCCCG
CCGCTCACACACACAGTTAATAATAACGCGGTTTGTGCTGGTAACTGAACACGCAATGTT
ATTGTGGATCGCAGGATCCGGCATGGGCGCGGCGGCCGTCTTCGAGCGGGGCGACTCGGT
GGACGAGCTCTCCAACGTGCGCCACATCCAGTCGCACAACTTCCTGTCCAAGGATGCTGC
GAAGTAGAGGCGTGGAACGAAATCGACCATCCTCAGGTATAGATCATCACAAGCAGCAGC
AGCAGCAGCAGCAAAGACAGACCCACAGCAGAAGAATAATTTTTACAGGCAAGAAGTTTG
AAGTAATGTAATTTCGTGGGGGATAAAAAAGGATGTATTATTAGTGACATAAGGCTTTCG
TGTACGTTTGTTCTGAATAAAATATGTTTTTTTCTTCTGAAGTAACAAGCCTTGCTTTGA
AGGTG

Homology of Contig U35_15095 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None