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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_2671_PI390587928Hv_44K_v2CGTCAGTCGTCTGTAGTAGTGTCGGGCTTGCAGATTAACAAGTTGTGTTTGCAGAAAAAA733GeneList: blue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 2.2382.9391.7950.8470.1630.165
Raw 118.715276.537137.060106.0295.7487.060



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK251628.17749e-22715 - 76910055 / 55plus ABC02586
MLOCMLOC_55968.112909e-22300 - 35410055 / 55minus ABC02586 ABC47163
JLOC1JLOC1_36148.120405e-221075 - 112910055 / 55minus
Harvest21ABC025868663e-25701 - 76010060 / 60plusABC02586
Harvest35U35_150979323e-25734 - 79310060 / 60plus



Contig Sequence (932 bp)

>U35_15097 932 Hv_44K_v2
TCGAGCACTGTTGGCCTCTGGACCCCAAAGCAGTGCAAACCTCTCTTCTTCCTCGAGTCC
CTGGTCATAGCACCATACAGCTAGCTAGCTAACAATGGCGGCCTCCAAGCCCCTTGCCCT
CCTACTGCTCGTGGCTCTGTCCGCGATGGCCATGTCCGCCGCTGGTCAAGGCTGCGGCGG
CCACAAGGTGACGGTGCAGAACCTGTGCGGCCACGACCTGAACCTGGGTATTGCGGCGGT
GGCGGACAGCAAGGTCCTCTTCCCCAACGGCTGGCTGCTCCCCAACGGGAAGCACGAGTC
GTTCGACGTGTGCTCGTGGTCCGGGAGCGTGTCGGCGCAGGGCGCCGCCGTGGCCAAGTT
CCACCTGGGCCACGACGGCGGCGCGTACTACGAGGTGAGCACCGACCAGGCCAACATGCC
CATCCGCGTCTCCGTCACCCCGCACGGGAGCCCGCTGCAGGGGCACTGCCCCACCGCCGG
ATGCAACAGCGGCAACCACTGCTTCGAGCACTCCGTCCCCGGCGGCAACTGCCACGGCGT
CACCGAGATCAAGATCGTCTACTACAACCCATAGATGGATCCATCCATCGCCCGCCTAGC
TATACTAGCTGCTGCACCTGCTTAGTAGTGTTGAATAATGCTGCAGCTAGCTCGATCGTC
ATCAGTCTTGCAACTGTTGCTCGTCTGCTTATTCTGTTGTGTGTTCCAAGGCGGTACCAG
TAGATTGTACCTTCGTCAGTCGTCTGTAGTAGTGTCGGGCTTGCAGATTAACAAGTTGTG
TTTGCAGAAAAAAAAAAAAAAAAAAATGAGCTTGTGTTTTTTTTTTTTTGAAAGTTAGCA
GGAGAGCTGTTAAGATTTCATTACAGAAGAAAAAGCCCGATGGTTGAAACTGCTCGGTTT
ATGCCCCCCCCCCCCAAAAAAAAAAAAAAAAA



Homology of Contig U35_15097 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2Bradi4g04190.11677e-62
Arabidopsis v10None