barSeed - Barley Seed Development Database

Probe CUST_26710_PI390587928

Source Contig U35_3905

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26710_PI390587928	Hv_44K_v2	ATAAGGGATTGTAAATATGTAACACTTGTATCCAAATAAAAGGGCAGAGACCTTGCAGAT	1131	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.596	0.539	0.428	1.014	3.108	5.655
Raw	12.287	4.273	2.998	19.473	20.385	41.868

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5540.1	1272	2e-24	11 - 70	100	60 / 60	minus	ABC09624
MLOC	MLOC_5540.2	903	7e-23	1 - 57	100	57 / 57	minus	ABC09624
JLOC1	JLOC1_3571.1	1240	8e-25	1150 - 1209	100	60 / 60	plus
Harvest21	ABC09624	956	3e-25	871 - 930	100	60 / 60	plus	ABC09624
Harvest35	U35_3905	1217	3e-25	1132 - 1191	100	60 / 60	plus

Contig Sequence (1217 bp)

>U35_3905 1217 Hv_44K_v2
GGCCGTACTGCGACACGACACCCTCCCACGCCCACGCCCACGCCCGCGCGCCGGAGGACG
AGCGAGGCTGAGGCACCGGCTCCGGCTCCGGCCCGAGATGCTCGCGGTGTTCGGCAGGGC
GGTGGCGCCGAGCCCGGAGGGGCTGCGGCAGCCGGGCGAGGCCGGGCATGGCGCGGACGG
GCTCGCGGCCCGGTTCCGGGAGGCCCGCCCCGGCGCGGTCACCGTAGACCTCGGTGGCGG
CGCCGCCATGGCCTACACTTCCCACGGCCAGAGCCCCTTCCTCCCCAGGTTGTTCGGCGT
CGTCGACGACATATTCTGCCTGTTCCAAGGCGCGGTCGAGAACATGGCTGTGCTGAAGCA
GCAGTACGGGTTGAGCAAGACTGCCACGGAGATCAACATCGTCATCGAGGCCTACAGAAC
CCTGAGGGACAGGGGGCCTTACCCTGCAGACCAGGTCGTGAGAGACTTAAATGGGAAATT
CGCGTTTGTGCTGTATGATCGCTCCACCAGCTCGGTCTTCATGGCTGCTGATGCTGATGG
CGGCGTCCCATTTTACTGGGGAGTCGATTCAGAGGGTCATCTTGTAATTTCCGACGATGA
TGAAATTGTGAAGAACGCCTGTGGAAAATCGTTTGCACCGTTCCCCAAAGGTTTCTTCTT
CACGACATCCGGTGGACTGCAGAGCTACGAGCATCCTCTGAACGAGGTGAAGCCGGTGCC
GAGGGTCGACAGCAAAGGGGAGGTTTGCGGCACAACTTACACGGTCGATGAACAAGCCAA
GAAAGATACCGCCGGAATTCCTCGGGTCGGCAGCGCTGCAGATTGGTCTTCACAGTACTG
AATCTGTAGATACCGTCCCAAACTTTCAGGCGTATGGTATACTCCCATCTTTGAACCCTG
CCGCGGTTAAATACCCCCTTAGAAATGTAAGAGCGTTTGGTGATGTAAACGCTCTTATAT
TTCTTTACGGAGGGAGTACATACTAATAATTGGGCATTTTGGGATGCCTATGCTCAGTGT
GGCCTTTGCCTTGTGCAATTTTTGCCTGCTGGGTGTATTATTATCTTGGTAATTTGTCTG
AGTTAAACTGTTGCACCTGTTGTTTCTTTAAACTATTTAAGAAAGATCAGCATAAGGGAT
TGTAAATATGTAACACTTGTATCCAAATAAAAGGGCAGAGACCTTGCAGATGTGTAAAAA
AAAAAAAAAATAAAAAA

Homology of Contig U35_3905 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g58170.1	250	5e-141	protein\|stem-specific protein TSJT1, putative, expressed
Brachypodium v1_2	Bradi1g05540.1	248	7e-152
Arabidopsis v10	AT3G22850.1	248	9e-107	Aluminium induced protein with YGL and LRDR motifs \| chr3:8089067-8090275 FORWARD LENGTH=248