barSeed - Barley Seed Development Database

Probe CUST_26707_PI390587928

Source Contig U35_3907

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26707_PI390587928	Hv_44K_v2	CATGAGAATCCCGTTGGCGTTGTTATTACTCTTTTCTGTAAAATATTGTTCTCATTCAGT	2357	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.404	1.928	1.587	0.812	0.289	0.270
Raw	72.916	161.575	111.687	89.835	11.208	11.544

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_3907	2452	3e-25	2358 - 2417	100	60 / 60	plus

Contig Sequence (2452 bp)

>U35_3907 2452 Hv_44K_v2
GACTAGGCTTGATTATTCTTCTCTTGTGTCCATCAGTCCATAACTCCATATGTGTCCATC
AGTCCATAACTCCATATGTGTCCATCAGTCTGTATACCACACTGGTCAAGTCTCTGATAA
GATAAGTAAGCCTTCTCCTCAACTCGGGTAGCAGCTCCCATGCCTGATCCTGCATCTGTT
AAGCTCCCATGACGAACTCCGTTGCATTTCCACGTTCTGTTATACTCCTAGCACTACCGA
TCTCCTCCATACTTTCACTTCTTCTATCAACGACTGAAGCAGAAGGTACTCTGGGGCGAG
CAGTTTGCCCCTCTTTCTCTTGTGGACACCTCCAGGACATCCGGCATCCTTTCCGTTTGC
GAGGTGATCCGCCTAGTTGTGGCGTTCGAGAATACGAGCTAGTTTGTAGAGATGGCCAGG
CTATAATTCACATCAACACAGGGAGATACTTCGTCACTAGCATCTCCTACAGTGACTCTG
TTTTCTGGGTTGTTGATGCCAAGCTGGATCATGGCAGCTGCCCCATTCCTGAGAGGAATC
AACTTCCTTATTTCTATGGATTTGATTCAGCTAACATGATACTGTTCTTACTGTATTCAG
GCCGATGGGCTTCTTTTGTGAGTTGTTCACGGATGATAAAAGATAATGCTAATTATAGGC
CTGTCGCCTGCCAGAGTACGAACAGTTCTTTTGTTTATGTGTCAACTGCGCTGCGTTGGG
CTGTAGATGTTGAGCCTTCATGTCGATACTTGGCCATGACTCCTTTGGAAAGTTCACGTC
TGAGGGTAGCAGATGTTACAAGTTACGATTATGAAGATGTCGTAAAATTTATGAGGGAAG
GGTTTGCTGTTAGGTTTCCGTTTCTACCCCCAGATTGGACATATTCTTGGATCATCAACA
CATGCCTGAATAATTCAAGGAGAACAACTCCAAGTCTGACAACAGTAAATTATATTGGGC
TGTGTTAGTCGTAGTATCTGCTATAAGTTTGCAGTACTATCCAGGTTAGTGTTTGCGCCA
TTGTCAATATTGATCTTCCTTGCCCACAAGTACTGGAAAACAAAGATATCAATTGACGCA
GTTGAGAGGTTCCTCCAGATGCAACTAGCCCTTGGCCCAACAAGGTTCGCTTACACAGAC
ATCACTGCGATCACTAGCCACTTCAAAGAGAAGCTGGGCCAAGGAGGCTACGGGTCCGTG
TACAAAGGTGTGCTTCCTGGTGACGTCCATGTCGCCATCAAAATGTTGGTCAGCTCCATG
TCCAACGGAGAAGAGTTCATCAGTGAGGTGTCCAGCATCGGAAGCATTCACCATGTCAAC
GTAGTGCGTCTAGTGGGTTTCTGCTCCGAGGAAATGAGGAGGGCTCTTGTCTACGAGTAC
ATGCCCCATGGATCTCTTGAGAAGTACATCTTCTCGCCAGAGAAGAGTTTCTCCTGGGAC
AAGCTCAATCAGATTGCTCTGGGCATCGCCAGAGGGATCGATTACCTGCACCGAGGGTGC
GATATGCAGATATTACACTTCGACATCAAGCCTCACAACATCCTGTTGGACAGCGACTTC
ACCCCGAAAATCGCGGACTTTGGGCTCGCAAAACTGTACCCCAGAGACAACAGCTTTTTG
CCGGTGAGCGCTGCGCGGGGAACAGTCGGCTACATAGCTCCTGAGATGGTGTCCCGTAGC
TTTGGCGCCATATCGTCCAAGTCTGATGTCTACAGCTTCGGGATGTTGTTGCTGGAGATG
GCCGGGGGGCGGAGGAACGTGGATCCACGCGCGTCAAGGAGCCAGACGTACTACCCGGCA
TGGGTGTACAATCAGCTGTCCCGACAAGAGGTGGGTGTTGAGATCTCGGAGGCTGTTGTT
GGTATCCATCAGGTGGAGAGGAAGTTGTGTGTCGTTGCGCTGTGGTGCATCCAGATGAAG
CCAGACGATCGACCGGCGATGAGTGAGGTGCTAGACATGCTCGAAGCTGGCATCGATGGC
CTGGAGATGCCTCCCGAGCCCTTCTTCTGCGGGGACGAGTACGCCCCTGCTGCAGATTCT
TCAATATTACTATTATCAGAGATAAGTACAATCTCCGAGTGAAATATACCTGCATATATG
TCCTAGTTTTGGACCAAATTCTAATCCTCCAGCCACCTCGGGCGTCTTGTGCTGAGTGCC
CTCGGTAAGTCGATACTTATTTTGTAAGGTTTGAGTTTGTAAGATTGTCTTTGGGTTAAA
CTGTATGCAATGTAAAGAGGATAGGTTTCTTAATACGAAGAGAAAACGTCCAAAATGGTG
ATGCAAATTATAAATGCAAGCAACCTTCGGATGAGAGAAGCGTTTTCTGTAGAATATGTG
ATCTCGGCTCAAGGAAACATGAGAATCCCGTTGGCGTTGTTATTACTCTTTTCTGTAAAA
TATTGTTCTCATTCAGTTGTACTATACTTAAATTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_3907 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g02580.1	647	0.0	protein\|protein kinase domain containing protein, expressed
Brachypodium v1_2	Bradi2g01120.1	632	0.0
Arabidopsis v10	AT1G66910.1	666	2e-90	Protein kinase superfamily protein \| chr1:24961634-24963941 REVERSE LENGTH=666