- Probe CUST_26705_PI390587928
- Source Contig U35_3908
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_26705_PI390587928 | Hv_44K_v2 | CAAATTCGTTTCATTGGAAGCTAATCGTCCTCGGTTTCTGCAGTTGGAAGCGGGATAGTT | 106 | GeneList: darkolivegreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.449 | 0.502 | 1.028 | 1.697 | 0.988 | 1.823 |
| Raw | 71.074 | 121.149 | 222.283 | 581.114 | 119.973 | 234.598 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_68805.2 | 253 | 2e-24 | 80 - 139 | 100 | 60 / 60 | plus | None |
| Harvest21 | ABC08736 | 493 | 3e-25 | 107 - 166 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_3908 | 494 | 3e-25 | 107 - 166 | 100 | 60 / 60 | plus |
Contig Sequence (494 bp)
>U35_3908 494 Hv_44K_v2 CTTCCCTCCCGTTAAAACAAAACAAAACACACACACACATCGTCTTCCTCCCAGATCCGA TTTCACCAGAAATTAACCTAATCCCCTGTAATCGACCCGTCTTTACCAAATTCGTTTCAT TGGAAGCTAATCGTCCTCGGTTTCTGCAGTTGGAAGCGGGATAGTTCTTGGGTCATCGGA AGCGTCACGCATGGCGGATGAGGAGGTATCTGACCCAAAGGCACTCCTAGAGGATCGTAC GAAGCCTAAGTGTGTCTACCTGTGGTATGAATATCAGAAATGCGTCAAGAGAATTGAAGG TGATGAGACCGGGCAAAAGCATTGCACTGGCCAGTACTTCGATTACTGGAAATGCATCGA CAAGCATGTTGCTGAGAAACTCTTTGATAGCTTAAAATGAAAAGGGAATTGTTCTCTCTA GCTACTTTTTGCTCAACAGTGGCAATAATCATATCACTTGCACTCCTTATTGACAATTCA GGTGCTTATCGTAT
Homology of Contig U35_3908 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |