barSeed - Barley Seed Development Database

Probe CUST_26702_PI390587928

Source Contig U35_41058

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26702_PI390587928	Hv_44K_v2	TGGCTCAAGCTAAAAAGAAGTATGATGGGCTGGAATATAATTTAGAGGTAGAAACATTAC	387	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53348.1	3960	7e-23	3737 - 3796	98	59 / 60	plus	None
JLOC1	JLOC1_34268.3	3985	4e-23	3805 - 3864	98	59 / 60	plus
JLOC1	JLOC1_34268.2	978	4e-23	798 - 857	98	59 / 60	plus
JLOC1	JLOC1_34268.1	3865	4e-23	3685 - 3744	98	59 / 60	plus
Harvest35	U35_41058	462	3e-25	388 - 447	100	60 / 60	plus

Contig Sequence (462 bp)

>U35_41058 462 Hv_44K_v2
TTTCGGTTCAACTTGCCAGATTGCTACTCCTCCATATTCACCACCTTGTGGGGATACTCA
TTCATCAAGAATTGAGGTTGACAGTGTTGGGGCATCACATGTTCATCCAACGTCAGCCAA
TCAGATGCCAATAGACTCCACTCCTGGGCCAAGTTTGTCTGAAGATGGGCTTGATTCAAT
TCACAGTCCTAGGGCATCACATGTTCATCCAGCTTCAGCCAATCAGGTGCCAACAGGCTC
CCCTCCTGGGCCATCTTTGGCTGAAGATGGGTTTGACTCGGATATATTTACCATTGAGTT
GAGTCGATTACAAAAGTTGGCTAATCTGATAACAATGAGGCATCAGGAGAAGATAGAACA
GCTTAATTTGGCACGTGGGAATAGAGTTGGCTCAAGCTAAAAAGAAGTATGATGGGCTGG
AATATAATTTAGAGGTAGAAACATTACCGAGAAAGAGAGAAC

Homology of Contig U35_41058 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None